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基于高通量测序Survey评估测定雷竹基因组大小

Genome Survey of Phyllostachys violascens ‘Prevernalis’ Based on High-thoughput Squencing

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【作者】 杨杰芳甘然曾庆南程平王海霞

【Author】 YANG Jie-fang;GAN Ran;ZENG Qing-nan;CHENG Ping;WANG Hai-xia;Jiangxi Academy of Forestry;

【通讯作者】 王海霞;

【机构】 江西省林业科学院

【摘要】 为研究雷竹基因组信息,基于高通量测序,利用Illumina测序平台对雷竹基因组进行了分析,采用K-mer法预测雷竹基因组大、杂合度和重复序列等基因组特征,结果表明:雷竹基因组大小约为1 913 Mb,修正后为1 897 Mb,杂合率为1.7%,重复序列比例为69.38%。

【Abstract】 Based on high-throughput sequencing, the genome of Phyllostachys violascens ‘Prevernalis’ was analyzed by Illumina sequencing platform, in order to study its genomic information. The K-mer method was used to predict its genomic characteristics, such as genome size, heterozygosity and repetitive sequence. The results showed that the size of Phyllostachys violascens ‘Prevernalis’ genome was about 1 913 mb, the revised size was 1 897 mb, the heterozygosity rate was 1.7%, and the proportion of repetitive sequence was 69.38%.

【基金】 江西省林业科技创新专项(202119)
  • 【文献出处】 竹子学报 ,Journal of Bamboo Research , 编辑部邮箱 ,2021年02期
  • 【分类号】S795.9
  • 【被引频次】3
  • 【下载频次】117
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