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应用直接重组酶聚合酶扩增技术快速检测烟曲霉菌

Rapid detection of Aspergillus fumigatus by direct recombinant polymerase amplification

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【作者】 王秋平黄恩奇杨银梅钟志敏陈斌

【Author】 WANG Qiu-ping;HUANG En-qi;YANG Yin-mei;ZHONG Zhi-min;CHEN Bin;The First Affiliated Hospital of University of South China;

【通讯作者】 陈斌;

【机构】 南华大学附属第一医院检验科广州医科大学附属广州市第一人民医院检验科

【摘要】 目的通过建立重组酶聚合酶扩增技术(recombinase polymerase amplification,RPA)直接检测标准烟曲霉菌株的方法,探讨其无需样本前处理的可行性。方法针对标准烟曲霉核酸序列保守区域设计RPA扩增引物,使用100、10-1、10-2、10-3、10-4、10-5麦氏浊度的标准烟曲霉菌液作为无样本前处理组进行直接RPA扩增;同时,分别采用柱式法、磁珠法、氯化苄法提取烟曲霉菌DNA作为样本前处理对照组并进行RPA扩增,最后,应用2%琼脂糖凝胶电泳对产物进行分析。结果标准烟曲霉菌的100、10-1、10-2及10-3麦氏浊度均可于39℃30min内扩增出目的条带;三种提取方法结果分别为:柱氏法(13.8±0.83)ng/μl,磁珠法(11.5±2.25)ng/μl,氯化苄法(64.9±1.31)ng/μl,三种方法均能扩增出目的条带,其中氯化苄法产出率较高(64.9±1.31)ng/μl。结论 RPA可以扩增出未经前处理(核酸提取)的样本,具有快速简便的优点,为检测烟曲霉菌提供了一个有效的工具。

【Abstract】 OBJECTIVE To evaluate the feasibility of the recombinase polymerase amplification technology(RPA)in detecting Aspergillus fumigatus without sample pretreatment.METHODS RPA amplification primers were designed according to the conserved regions of A fumigatus nucleic acid sequence.The standard A fumigatus solutions at Meyer’s Turbidity of 100,10-1,10-2,10-3,10-4,10-5 were detected by RPA without sample pretreatment.The DNA templates of A fumigatus were extracted by column method,magnetic beads method and benzyl chloride method and then amplified by RPA,which were used as sample pretreatment control group.Finally,the amplified products were analyzed by 2% agarose gel electrophoresis.RESULTS The target band could be amplified from the standard A fumigatus solutions at Meyer’s Turbidity of 100,10-1,10-2 and 10-3 within 30 min at 39℃.Results of the three extraction methods were:column method(13.8±0.83)ng/μl,magnetic bead method(11.5±2.25)ng/μl,and benzyl chloride method(64.9±1.31)ng/μl.All three extraction methods could amplify the target band,and the highest yield was obtained with the benzyl chloride method(64.9±1.31 ng/μl).CONCLUSION Without sample pretreatment steps,RPA can amplify unprocessed(nucleic acid extraction)samples,with the advantages of rapid and simple process,providing an effective tool for detection of A fumigatus.

【基金】 国家自然科学基金资助项目(81201163);广东省医学科研基金资助项目(A2018122);广州市科学研究计划基金资助项目(201804010333)
  • 【文献出处】 中华医院感染学杂志 ,Chinese Journal of Nosocomiology , 编辑部邮箱 ,2018年24期
  • 【分类号】R446.5
  • 【被引频次】3
  • 【下载频次】191
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