节点文献
旱稻孢囊线虫在广西的发生及其rDNA-ITS异质性分析
Occurence of Heteroderaelachistain Guangxi Region and Its Intra-species Heterogeneity in rDNA-ITS Region
【摘要】 2011年,从广西龙胜梯田的水稻根系和稻田土壤中分离到一种孢囊线虫。该线虫形态特征与已报道的旱稻孢囊线虫(Heterodera elachista)相符,其rDNA-ITS序列与GenBank中旱稻孢囊线虫的rDNA-ITS序列相似性为97.7%~99.3%。rDNA-ITS分子发育树表明该线虫与旱稻孢囊线虫以100%的置信度及较小的遗传距离形成一个单系,据此将该线虫鉴定为旱稻孢囊线虫。进一步对本研究获得的10条旱稻孢囊线虫rDNA-ITS区序列及Tanha Maafi等报道的1条旱稻孢囊线虫rDNA-ITS序列(AF498391)的酶切位点进行分析,结果发现AluⅠ、AvaⅠ、MvaⅠ和RsaⅠ4个内切酶的酶切位点在11条序列中完全一致,而Bsh1236Ⅰ、BsuRⅠ和CfoⅠ3种酶的酶切位点存在变异,其中Bsh1236Ⅰ和BsuRⅠ有2种变异型,CfoⅠ则有3种变异型,表明旱稻孢囊线虫的rDNA-ITS序列存在DNA异质性。
【Abstract】 In 2011,a cyst nematode was isolated from rice roots and soils in Longsheng Terrace of Guangxi Region, China.Morphological characteristics of the cyst nematode were consistent with previous descriptions of Heterodera ela- chista.The rDNA-ITS sequences of the cyst nematode and H.elachistain GenBank shared 97.7%-99.3%identi- ties.The phylogenetic tree based on rDNA-ITS showed that the cyst nematode was in the same monophyletic clade as H.elachista with 100%support and short branch differences.The results indicated the cyst nematode was Heterodera elachista.The restriction enzyme cutting sites of ten rDNA-ITS sequences of H.elachista amplified and the one reported by Tanha Maafi(GenBank accession number:AF498391)were analyzed.The restriction enzyme cutting sites of AluⅠ,AvaⅠ,MvaⅠand RsaⅠin these 11sequences were identical,however there were 2different patterns after Bsh1236Ⅰand BsuRⅠdigestion,respectively,and 3different patterns after CfoⅠdigestion.The results show intra- species heterogeneity in rDNA-ITS region exists in H.elachista.
【Key words】 Heterodera elachista; rice; identification; rDNA-ITS; heterogeneity;
- 【文献出处】 中国水稻科学 ,Chinese Journal of Rice Science , 编辑部邮箱 ,2014年01期
- 【分类号】S435.112
- 【被引频次】25
- 【下载频次】271