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泥鳅线粒体DNA控制区结构分析及遗传多样性研究

Structure of mitochondrial DNA control region and genetic diversity of Misgurnus anguillicaudatus

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【作者】 荣朝振祖国掌胡建华孙守旗孙棠丽

【Author】 RONG Chaozhen1,ZU Guozhang1,HU Jianhua1,SUN Shouqi2,SUN Tangli3(1.College of Animal Science and Technology,Anhui Agricultural University,Hefei 230036,China; 2.Huaiyuan County Aquaculture Technology Extension Center of Anhui Province,Huaiyuan 233400,China; 3.Huaiyuan Fishery Science Technology Development Co.,Ltd.of Anhui Province,Huaiyuan 233400,China)

【机构】 安徽农业大学动物科技学院安徽省怀远县水产技术推广中心安徽省怀远县渔业科技发展有限责任公司

【摘要】 采用PCR和DNA测序技术对4个泥鳅(Misgurnus anguillicaudatus)群体的线粒体DNA控制区序列进行比较,研究其遗传多样性和控制区的结构。结果显示,用于分析的线粒体DNA控制区片段序列为918~920 bp。32个序列中共发现了56个多态位点,其中32个转换位点,19个颠换位点,5个转换与颠换同时存在的位点,定义了32种单倍型。同时对控制区结构进行分析,识别了其终止序列区(ETAS)、中央保守区(CD)和保守序列区(CSB)的关键序列。4个地理群体的单倍型多样性(Hd)、核苷酸多样性(Pi)和平均核苷酸差异数(K)分别为0.992、0.012和10.698。群体间的平均Kimura双参数遗传距离(Kimura 2-parameter distance,K2-P)、遗传分化指数(Fst)、基因交流值(Nm)和分子方差分析(AMOVA)均表明4个泥鳅群体具有较高的遗传分化,基因交流贫乏。利用核苷酸序列构建的NJ分子系统树揭示4个群体分为2个谱系,除范县群体外,其余各群体间相互交叉聚集。

【Abstract】 We compare and study the genetic diversity and structure of DNA control region of 4 Misgurnus anguillicaudatus populations by using PCR and DNA sequencing.The results show that the sequence of mitochondrial DNA control region is 918~920 bp.Among 32 sequences,a total of 56 polymorphic loci were detected,including 32 transitions,19 transversions,5 transitions-transversions and 36 haplotypes.The key sequences of extended terminal associated sequences(ETAS),central domains(CSB-A,B,C,D,E and F) and conserved sequence blocks(CSB-1,CSB-2 and CSB-3) were discovered.The haplotypic diversity(Hd),average genetic distance(Pi) and average number of pairwise differences(K) is 0.992,0.012 and 10.698,respectively.The average Kimura 2-parameter distance,Fst value,Nm value and AMOVA reveal great genetic differentiation among the 4 M.anguillicaudatus populations.The NJ phylogenetic tree constructed on nucleotide sequence indicates that the 4 populations form into 2 monophyletic lineages,and cross and cluster among one another except Fanxian population.

【基金】 安徽省科技攻关计划项目(07010302147)
  • 【文献出处】 南方水产科学 ,South China Fisheries Science , 编辑部邮箱 ,2011年05期
  • 【分类号】S917.4
  • 【被引频次】19
  • 【下载频次】374
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