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凡纳滨对虾微卫星DNA的筛选及其特性的研究

The isolation and characterization of microsatellite markers from Litopenaeus vannamei

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【作者】 贾智英全迎春梁利群孙效文

【Author】 JIA Zhi-ying 1,2,QUAN Ying-chun 1,2, LIANG Li-qun1, SUN Xiao-wen1 (1.Heilongjiang River Fishery Research Institute Chinese Academy of Fishery Sciences, Harbin 150070,China; 2.College of Aqua-life Sciences and Technology, Shanghai Fisheries University, Shanghai 200090, China)

【机构】 黑龙江水产研究所农业部北方鱼类生物工程育种重点开放实验室黑龙江水产研究所农业部北方鱼类生物工程育种重点开放实验室 黑龙江哈尔滨150070上海水产大学生命科学与技术学院上海200090黑龙江哈尔滨150070上海水产大学生命科学与技术学院黑龙江哈尔滨150070

【摘要】 采用小片段克隆法构建凡纳滨对虾的部分基因文库,用放射性同位素[γ-32P]ATP标记的(CA)15、(AT)12、(AG)12、(AAT)8、(AAG)8做探针筛选阳性克隆。共获得微卫星序列152个,其中二核苷酸为核心的微卫星序列:(AG)n>(AC)n>(AT)n,三核苷酸为核心的微卫星序列:(AAT)n>(CAT)n>(AAG)n。应用引物设计软件primer3.0设计引物105对。选择合成10对理论上易出现影子带的引物,筛选后用31个凡纳滨对虾个体对这些引物进行了评估,结果10对引物中有8对引物能扩增出谱带,其中1对扩增产物出现影子带,1对扩增产物为单态,有6对扩增产物出现多态。

【Abstract】 The partial genome library of Litopenaeus vannamei was constructed by method of small fragments DNA cloning and the positive clones were screened with the probes (CA) 15 , (AT) 12, (AG) 12, (AAT)8 and (AAG)8 labeled with [γ- 32P] ATP. 152 sequences containing microsatellites were obtained. The dinucleotide repeats were (AG)n>(AC)n>(AT)n and the trinucleotide repeats were (AAT)n>(CAT)n>(AAG)n respectively. 105 sets of primers were designed with the software primer 3.0. 10 primers that the stutter bands easily occur in theory were synthesized and 31 samples were tested with them. Eight loci can give bands and six had a degree of polymorphisms, one was monomorphic and one had stutter bands.

【基金】 国家自然科学基金(30271010)
  • 【文献出处】 上海水产大学学报 ,Journal of Shanchai Fisheries University , 编辑部邮箱 ,2007年01期
  • 【分类号】S917.4
  • 【被引频次】13
  • 【下载频次】293
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