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核桃SSR反应体系的优化

Optimization of SSR analysis system in walnut

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【作者】 刘晓丽何天明张美勇张立杰慈志娟张春雨陈学森

【Author】 LIU Xiao-li1, HE Tian-ming2, ZHANG Mei-yong3, ZHANG Li-jie1,CI Zhi-juan1, ZHANG Chun-yu1,CHEN Xue-sen1* (1Biological Laboratory of Pomology, Shandong Agricultural University, Taian, Shandong 271018 China; 2College of Plant Science and Technology, Tarim University, Alar, Xinjiang 843300 China; 3Shandong Fruit Research Institute,Taian, Shandong 271000 China)

【机构】 山东农业大学果树生物学实验室塔里木大学植物科技学院山东省果树研究所山东农业大学果树生物学实验室 山东泰安271018新疆阿拉尔843300山东泰安271000山东泰安271018

【摘要】 以清香、香铃、爱米格为试材,利用CTAB法提取基因组DNA,将PCR体系的主要成分设定5个梯度,根据每个成分的变化引起的PCR-SSR的效果差异,探讨了核桃SSR技术中PCR体系的主要成分对扩增结果的影响,并对引物WGA321的适宜退火温度进行优化。最终确定了引物WGA321的最适退火温度为48~52℃,PCR反应体系的最佳条件为:15μL体系中,Mg2+1.0mmol/L,dNTPs浓度0.40mmol/L,TaqE用量为0.5U,DNA模板1.0ng/μL,引物浓度为0.4μmol/L。利用此反应体系对部分核桃品种进行PCR扩增并电泳检测,扩增结果清晰且有较高的多态性,表明该体系适合核桃的亲缘关系分析。

【Abstract】 DNA of Qingxiang, Xiangling and Amigo walnut cultivars were distilled by CTAB. Every factor of PCR had five different concentrations and its variation changed the result of PCR-SSR. Then the factors affecting the SSR results of walnut were studied. The annealing temperature of primer WGA321 was optimized. The results showed that the optimal annealing temperature was 48 to 52 ℃, and the best reaction system of SSR-PCR was: 1.0 mmol/L Mg2+, 0.40 mmol/ L dNTPs,0.5 U Taq polymerase,1.0 ng/μL template DNA,and 0.4 μmol/ L primer in 15 μL reaction system. Using above PCR system, SSR fragments of 12 walnut cultivars were obtained. The clear and abundant polymorphism indicated this system was suitable for analysis of phylogenetic relationship.

【关键词】 核桃SSR优化
【Key words】 WalnutSSROptimization
【基金】 国家自然科学基金(30471196)。
  • 【文献出处】 果树学报 ,Journal of Fruit Science , 编辑部邮箱 ,2007年02期
  • 【分类号】S664.1
  • 【被引频次】37
  • 【下载频次】376
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