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新城疫病毒野毒株(HBG-1)的F蛋白部分序列同源性分析
Homology analysis of a newcastle disease virus(NDV) strain’s partial fusion protein
【摘要】 采用RTPCR方法对分离自河北省某鸡场的一株新城疫病毒 (HBG1)的核苷酸进行扩增 ,获得了分离株F0 裂解位点附近的基因片段 ,经测序分析 ,并与国际上已发表的新城疫病毒的核酸序列进行比较 ,结果表明其与标准株和疫苗株之间的同源性较低 ,仅为 82 %~ 86 %之间。运用计算机软件对其裂解位点处的氨基酸顺序进行预测和分析 ,结果表明该分离株为新城疫病毒强毒株并具有基因Ⅶ型的典型结构特征
【Abstract】 In order to find the difference of the cleavage site of a strain with F 48 E 9 and C 30 ,a part of the cleavage site of Fusion protein gene fragment was amplified by RTPCR.The sequence analysis showed this strain had low homology with F 48 E 9 and C 30 .Their homology were between 82 %~86 % in nucleotide sequence.A phylogenetic tree based on the published sequences of NDV reference strains was constructed and showed the isolated strain HBG1 belonged to the genotype Ⅶ NDV,a novel genotype NDV.The amino acid sequence of the cleavage site region(residues 112~117) of the F protein of strain HBG1 was matched to that of all virulent NDV strains,and the strain was proved to be an virulent strain.
【Key words】 Newcastle disease virus; RT_PCR; F gene; sequence analysis; genotype Ⅶ;
- 【文献出处】 中国预防兽医学报 ,Chinese Journal of Preventive Veterinary Medicine , 编辑部邮箱 ,2003年03期
- 【分类号】S852.65
- 【被引频次】12
- 【下载频次】89