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牛ACAD8基因结构及其多态性与生产性状的关联分析(英文)

Structure of the Bovine ACAD8 Gene and the Association of Its Polymorphism with the Production Traits

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【作者】 李恒德许尚忠高雪任红艳

【Author】 Hengde Li, Shangzhong Xu①, Xue Gao, Hongyan Ren Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100094, China

【机构】 中国农业科学院畜牧研究所中国农业科学院畜牧研究所 北京 100094北京 100094

【摘要】 乙酰辅酶A脱氢酶(ACAD)是由核基因编码存在于线粒体中黄色酶的一个家族,它催化脂肪酸的α和β-氧化,该家族第八成员负责催化缬氨酸分解代谢。本研究中获得了牛的ACAD8基因的mRNA和基因组DNA序列并通过基因组DNA与mRNA的比对确定了其基因结构。其mRNA序列包含一个1,251 bp的开放阅读框,一个37 bp 的5′非翻译区和一个 444 bp 的 3′非翻译区;其基因组DNA全长13,814 bp,包含11个外显子和10个内含子。我们从样本中随机选取6个个体进行扩增测序,结果表明牛的ACAD8基因13,408位(GenBank登录号:DQ435445)一个A-G单核苷酸多态。运用PCR-RFLP对不同的基因型进行了区分。对该SNP与来自5个品种共178头无亲缘关系的牛的生产性状进行了关联分析,结果表明:该A-G单核苷酸多态对日增重和嫩度有显著影响(P < 0.05)。具有G等位基因的牛比具有A等位基因的牛生长较快,其肉质也较嫩。因此,牛ACAD8基因在该位点的单核苷酸多态可以作为提高生长速度和牛肉嫩度的标记。

【Abstract】 Acyl-coenzyme A dehydrogenases (ACAD) are a family of nuclear-coded, mitochondrial flavoenzymes that catalyze the alpha, and beta-dehydrogenation of fatty acids. The eighth member of this family, ACAD8 catalyzes the valine catabolism. In this study, the bovine ACAD8 full-length mRNA and genomic DNA sequence were obtained and its gene structure was determined through alignment of the genomic DNA sequence to the mRNA sequence. The mRNA sequence consisted of a 1,251 bp open reading frame (ORF) flanked by a 37 bp 5′-untranslated region (UTR) and a 444 bp 3′-UTR; and its full-length genomic DNA sequence was 13,814 bp in length and included 11 exons and 10 introns. One A-G single nucleotide polymorphism (SNP) was revealed at nucleotide 13,408 (GenBank accession No. DQ435445) in the bovine ACAD8 gene by sequencing the polymerase chain reaction (PCR) products of 6 randomly selected individuals from the sample population. Different genotypes were determined by restriction fragment length polymorphism (RFLP). The association analysis of this SNP in bovine ACAD8 with production traits in 178 unrelated steers from 5 breeds showed that it had a significant effect on the daily gain and the beef tenderness (P<0.05). Cattle with the G allele grew more rapidly and the beef they produced was more tender than those with the A allele. Thus, this SNP of the bovine ACAD8 gene can be used as an indicator to improve the growth rate and the beef tenderness.

【关键词】 ACAD8基因结构PCR-RFLP关联分析
【Key words】 ACAD8gene structurePCR-RFLPassociation analysiscattle
【基金】 This work was supported by Chinese National Programs for High Technology Research and Development (No. 2002AA242011);the 10th Five Years Key Problems for Science and Technology Development of China (No. 2002BA518A14).
  • 【文献出处】 遗传学报 ,Acta Genetica Sinica , 编辑部邮箱 ,2007年04期
  • 【分类号】S823
  • 【被引频次】5
  • 【下载频次】166
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