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诺如病毒CHN02/LZ35666株RdRp和VP1基因序列分析

Sequence Analysis of Norovirus CHN02/LZ35666 from Lanzhou City of China Based on RdRp and VP1 Genes

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【作者】 靳淼; 樊景凤; 于天飞; 方肇寅; 王君伟;

【Author】 JIN Miao1,FAN Jing-feng2,YU Tian-fei1,FANG Zhao-yin3,WANG Jun-wei1(1.Department of Preventive Veterinary,College of Veterinary Medicine,Northeast Agriculture University,Harbin 150030,China;2.National Marine Environmental Monitoring Center,Dalian 116023,China;3.National Institute for Viral Disease Control and Prevention,Chinese Center for Disease Control and Prevention,Beijing 100052,China)

【机构】 东北农业大学动物医学院预防兽医学系; 国家海洋环境监测中心; 中国疾病预防控制中心病毒病预防控制所; 东北农业大学动物医学院预防兽医学系 哈尔滨150030; 大连116023; 哈尔滨150030; 北京100052;

【Abstract】 Sequence analysis of a new norovirus(NV) isolated from Lanzou city of China was performed based on partial sequence of RNA dependent RNA polymerase(RdRp) and complete capsid protein(VP1) gene.The isolated strain CHN02/LZ35666 shared high sequence homology with GII-4 NVs.Nucleotide homologies of RdRp region and encoded capsid protein region were 90.4%-98.6% and 89.8%-95.7%,respectively,while amino acid homology of capsid protein region was 94.4%-97.4%.The analysis of GDD motif in RdRp region indicated this GDD motif of Lanzhou strain differed from those of the GII-4 predominant epidemic strains.Lanzhou strain formed an independent branch in GII-4 cluster in the phylogenetic tree based on nucleotide sequence of RdRp region and amino acid sequence of capsid protein.Sequence alignment revealed a mutation at the fourth key site of the receptor-binding interface in the strains isolated after 2002 compared with those of previous strains suggesting a possible change of binding pattern to HBGAs receptors.

【基金】 国家863课题(课题编号:2002A639470)
  • 【文献出处】 病毒学报 ,Chinese Journal of Virology , 编辑部邮箱 ,2007年01期
  • 【分类号】R373
  • 【被引频次】12
  • 【下载频次】335
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