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水稻低丰度表达基因OsAMT1;3实时荧光定量PCR方法的建立及其应用

Establishment and Application of a Real-Time Fluorescence Quantitative PCR for Detecting Transcripts of Low Abundance Gene, OsAMT1;3,in Rice

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【作者】 孙淑斌李宝珍胡江徐国华

【Author】 SUN Shu-bin, LI Bao-zhen, HU Jiang, XU Guo-hua~ * (College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing 210095, China; ~ * Corresponding author, E-mail: ghxu@njau.edu.cn )

【机构】 南京农业大学资源与环境科学学院南京农业大学资源与环境科学学院 江苏南京210095江苏南京210095

【摘要】 采用实时荧光定量PCR技术,通过使用特异引物,对水稻中的低丰度表达基因OsAMT1;3进行了转录水平上的定量分析,成功建立了可检测低丰度表达基因的SYBR Green实时荧光定量PCR技术平台。该方法具有很好的准确性和实用性。获得的荧光定量PCR扩增曲线,基线平整,指数区明显,斜率大且固定;线性范围广,17~36个循环都能测出;稳定性、重复性好,变异系数仅为0.47%;标准曲线表明,循环阈值与PCR体系中起始模板量的对数值之间有着良好的线性关系,可对基因表达进行相对定量;缺氮条件下OsAMT1;3与纯NH4+处理相比表达量增加4倍以上。

【Abstract】 One of the ammonium transporter genes in rice,OsAMT1;3,normally expressed in low abundance,which is difficult to quantify its expression by using traditional methods,such as Northern blot,PCR technique. A technique for real-time quantification of OsAMT1;3 relative to a housekeeping gene for encoding an actin in rice using real-time SYBR Green quantitative PCR(RQ-PCR) with specific primers was established,which showed:the amplification curve had flat baseline,distinct exponential area,large and stable slope; The coefficient of variation of the technique was 0.47%; There was a linear relationship between threshold cycle value at which sample crosses threshold and the logarithmic value of template concentration; The expression of OsAMT1;3 was enhanced 4-fold by nitrogen starvation in comparison to supply of ammonium as sole source of nitrogen.

【基金】 国家自然科学基金资助项目(30471037);国家973计划资助项目(2005cb120903)。
  • 【文献出处】 中国水稻科学 ,Chinese Journal of Rice Science , 编辑部邮箱 ,2006年01期
  • 【分类号】S511
  • 【被引频次】55
  • 【下载频次】1251
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