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荧光定量RT-PCR在轮状病毒检测中的应用

Quantitation of rotavirus by real time reverse transcription polymerase chain reaction

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【作者】 王志宇王健伟何深一孟红韩金祥洪涛

【Author】 WANG Zhi-yu~(1,2,3),WANG Jian-wei~(2,3),HE Shen-yi~1,MENG Hong~4,HAN Jin-xiang~3,HONG Tao~(2,3)(1.Department of Parasitology,School of Medicine,Shangdong University,Jinan 250012,Shandong,China;2.National Institute for Viral Disease Control and Prevention,Chinese Center of Disease Control,Beijing 100052,China;3.Shandong Institute of Virology/Shandong Key Laboratory of Medical Virology and Key Laboratory of Biotechnological Pharmaceuticals,Jinan 250062,Shandong,China;4.Institute of Basic Medicine,Shandong Academy of Medical Sciences,Jinan 250062,Shandong,China)

【机构】 山东大学医学院寄生虫学教研室中国疾病预防控制中心病毒病预防控制所山东省医学科学院基础医学研究所山东省病毒学研究所/山东省医学病毒学重点实验室暨卫生部生物技术药物重点实验室中国疾病预防控制中心病毒病预防控制所 山东济南250012北京100052山东济南250062山东济南250012

【摘要】 目的:建立轮状病毒的荧光定量RT-PCR检测方法,用于检测临床腹泻样本。方法:使用Taqman探针技术,建立轮状病毒VP6特异的荧光定量RT-PCR体系。与WHO推荐的轮状病毒检测方法ELISA平行检测,对该体系的检测范围、灵敏度、特异性等参数进行评价。并将该体系用于临床腹泻样本。结果:该荧光定量RT-PCR体系具有高度灵敏度和特异性,线性范围宽,最低可检出1TCID50/ml。对113份临床腹泻样本的平行检测结果显示,该荧光定量RT-PCR体系与ELISA的检出率差异无统计学意义(χ2=0.41,P>0.5),可同样用于临床样本检测。结论:成功建立了轮状病毒荧光定量RT-PCR体系,该体系灵敏、特异、重复性好,可用于临床检测。

【Abstract】 Objective: To develop a more sensitive and specific diagnostic test for rotavirus by applying real time quantitative RT-PCR technology.Methods: The real time RT-PCR specific for VP6 gene of rotavirus was developed by applying Taqman technology.And the parameters of the developed real time RT-PCR,including sensitivity,specificity and reproducibility were evaluated.Meanwhile,ELISA was used as a parallel detection method to detect RV in stock and clinical fecal specimen since it was recommended as a standard method for RV detection by WHO.Results: The detection limit of the real time quantitative RT-PCR was 1TCID50/ml,which was 1log more sensitive than ELISA.The relationship between threshold cycle(Ct) and amount of virus was linear(r=0.998) over a range of 1 to 10?000 TCID50/ml.The assay was specific to RV and its efficiency was confirmed by the detection of small amounts of viral RNA in clinical samples.Of the total 113 specimens,80(70%) and 76(67%) were positive by real time RT-PCR and ELISA kit,respectively.The overall detection rate of the assay was not statistically different from that of ELISA(χ2 =0.41,P>0.5).Conclusion: The developed real time RT-PCR assay of group A rotavirus described here allows a large number of samples to be screened rapidly,sensitively and specifically,and it will potentially be a suitable tool for the detection of RV in field,samples including clinical specimen,polluted water,shellfish and so on.

【基金】 国家“十五”“食物安全关键技术”重大专项课题基金资助(2001BA804A22);国家“十五”科技攻关计划基金资助课题(2003BA712A03-04)
  • 【文献出处】 山东大学学报(医学版) ,Journal of Shandong University(Health Sciences) , 编辑部邮箱 ,2006年03期
  • 【分类号】R450
  • 【被引频次】9
  • 【下载频次】376
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