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一组新氨基酸描述子用于肽定量构效关系研究

New Descriptors of Aminoacids and Their Applications to Peptide Quantitative Structure-Activity Relationship

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【作者】 梁桂兆周鹏周原张巧霞李志良

【Author】 LIANG, Gui-Zhaoa,b,c ZHOU, Penga ZHOU, Yuana,b,c ZHANG, Qiao-Xiaa LI, Zhi-Liang*,a,b (a College of Chemistry and Chemical Engineering, Chongqing University, Chongqing 400044) (b State Key Laboratory of Chemo/Biosensing and Chemometrics at Hunan University, Changsha 410082) (c College of Bioengineering, Chongqing University, Chongqing 400044)

【机构】 重庆大学化学化工学院湖南大学化学生物传感与计量学国家重点实验室长沙410082重庆大学生物工程学院重庆400044湖南大学化学生物传感与计量学国家重点实验室长沙410082 重庆400044重庆400044

【摘要】 用主成分分析从20种天然氨基酸0D~3D结构信息中收集到的共1369个描述子变量得到了一组新氨基酸描述子(SZOTT),将其用于血管紧张素转化酶抑制剂和苦味二肽结构表征并以偏最小二乘法建立定量构效关系模型,得复相关系数RCU2分别为0.894和0.908,留一法交互检验的复相关系数RCV2分别为0.828和0.736,估计均方根误差RMS分别为0.331和0.195.研究结果表明,SZOTT描述子含信息量大,操作简便,结构表达能力强,有望在多肽定量构效关系研究中得到进一步推广.

【Abstract】 A new set of descriptors, namely vector of scores for zero dimension, one dimension, two di- mension and three dimension (SZOTT), was derived from principle component analysis of a matrix of 1369 structural variables of 0D~3D information for 20 coded aminoacids. SZOTT scales were then employed to express structures of angiotensin-converting enzyme inhibitors and bitter tasting thresholds, and to construct QSAR models based on partial least square (PLS). The results obtained are as follows: the multiple correla- tion coefficient (RCU2) of 0.894 and 0.908, the leave one out cross validated RCV2 of 0.828 and 0.736, and root-mean-square error for estimated error (RMS) of 0.331 and 0.195, respectively. Satisfactory results showed that, as new aminoacid scales, data of SZOTT may be a useful structural expression methodology for study on peptide QSAR (quantitative structure-activity relationship) due to its many advantages such as plentiful structural information, easy manipulation, and high characterization competence.

【基金】 国家“春晖计划”教育部启动基金(No.99-4-4+37);霍英东基金(No.98-7-6);重庆直辖市应用基础基金(No.01-3-6);重庆大学自主创新科技攻关项目(No.03-5-6+04-10-10);湖南大学化学生物传感与计量学国家重点实验室项目(No.2005-12)资助项目.
  • 【文献出处】 化学学报 ,Acta Chimica Sinica , 编辑部邮箱 ,2006年05期
  • 【分类号】O629.72
  • 【被引频次】38
  • 【下载频次】345
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