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异源双链泳动分析法在人类免疫缺陷病毒1基因亚型分析中的应用

Application of heteroduplex mobility assay in genetic subtyping on human immunodeficiency virus type 1

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【作者】 陈亮严延生翁育伟王惠榕吴守丽陈舸郑兆双郑健颜苹苹

【Author】 CHEN Liang, YAN Yansheng, WENG Yuwei, WANG Huirong, WU Shouli, CHEN Ge, ZHENG Zhaoshuang, ZHENG Jian, YAN Pingping. Fujian Provincial Sanitary and Anti Epidemic Station,Department of AIDS Prevention and Control,Fuzhou 350001, China

【机构】 福建省卫生防疫站艾滋病防治研究室福建省卫生

【摘要】 目的 运用异源双链泳动分析法 (HMA )进行人类免疫缺陷病毒 1(humanimmunodeficiencyvirus 1,HIV 1)基因亚型分析 ,了解福建省HIV 1亚型的流行情况。方法 收集细胞培养中HIV 1感染的外周血单个核细胞 (PBMC) ,聚合酶链反应 (PCR)扩增HIV 1膜蛋白基因(env)区的核酸片段 ,与标准亚型的对照质粒的PCR产物进行杂交 ,形成异源双链二聚体 ,根据其在聚丙烯酰胺凝胶电泳中的泳动率确定其亚型 ,并进一步对标本进行序列测定和系统树分析。结果15份标本中 ,80 .0 0 %为E亚型 ,6 .6 7%为B亚型 ,2份不能确定其亚型。比较异源双链泳动法和序列测定法的结果 ,显示两种分析方法对HIV 1病毒基因分型有较高的一致性 ,其亚型一致率为86 .6 7%。结论 福建省流行的HIV 1毒株以E亚型为主。亚型分析法具有快速、简便、经济和高特异性的特点 ,可用作对HIV流行毒株进行长期监测的重要手段。

【Abstract】 Objective Using heteroduplex mobility assay(HMA) to subtype human immunodeficiency virus type 1(HIV 1) for the purpose of understanding HIV 1 subtype epidemic in Fujian province. Methods DNA fragments of HIV 1 env gene were amplified from peripheral blood mononuclear cell(PBMC) cocultures of HIV 1 infected individuals by nested polymerase chain reation(PCR). Heteroduplexs were formed through hybridizing PCR products from the samples and reference plasmid.According to the mobility of heteroduplexs in polyacrylamide gel electrophoresis, HIV 1 subtype from that sample was characterized and further confirmed by nucleotide sequencing analysis. Results Thirteen of 15( 86.67 %) samples were successfully subtyped by HMA,except 2 failures. Subtype E and B took up 80%(12/15) and 6.67 %(1/15) respectively. Results indicated a high concordance between HMA and nucleotide sequencing analysis and concordance rate was 86.67 %(13/15). Conclusions Subtype E appeared to be the major epidemic strain of HIV 1 in Fujian. HMA showed the characteristics of fastness, easiness, economie and with high specificity, and can be used in the survillence for the epidemic strain of HIV 1.

  • 【文献出处】 中华流行病学杂志 ,Chinese Journal of Epidemiology , 编辑部邮箱 ,2002年02期
  • 【分类号】R373
  • 【被引频次】2
  • 【下载频次】65
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