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日本血吸虫(中国大陆株)成虫表达序列标签的获取及新基因的发现

GENERATION OF ADULT STAGE SCHISTOSOMA JAPONICUM(CHINESE STRAIN) EXPRESSED SEQUENCE TAGS AND DISCOVERY OF NEW GENES

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【作者】 卞国武余新炳吴忠道徐劲单志新马长玲

【Author】 BIAN Guowu,YU Xinbing,WU Zhongdao,et al (The Department of Parasitology,Sun Yet sen University of Medical Sciences,Guangzhou 510089)

【机构】 中山医科大学寄生虫学教研室中山医科大学寄生虫学教研室 广州 510089广州 510089广州 510089

【摘要】 目的 运用表达序列标签 (ExpressedSequenceTag ,EST)技术快速、经济地发现日本血吸虫 (中国大陆株 )新基因。方法 随机挑取日本血吸虫 (中国大陆株 )成虫cDNA文库单个重组克隆进行部分测序以获得EST ,获得的EST通过BLAST程序同EMBL寄生虫数据库和GenBank数据库进行比较及同源性分析。结果 本研究共随机挑取日本血吸虫 (中国大陆株 )成虫cDNA文库单个重组克隆 2 0 0个 ,获得了 76个有EST价值的序列 ,其中 7.9%为日本血吸虫已知序列 ,5 .3 %为日本血吸虫同源序列。曼氏血吸虫或其他生物的同源序列占有EST价值的序列的 2 2 .4 % ,未知序列占 5 9.2 %。在获得的76个有EST价值的序列中 ,66个成功在GenBankdbEST中登录。通过同源性分析 ,发现了一些令人感兴趣的基因。结论 EST方法有助于快速、经济地发现日本血吸虫 (中国大陆株 )成虫新基因。

【Abstract】 Aim To rapidly and economically obtain the new genes of adult stage Schistosoma japonicum (Chinese strain) by expressed sequence tag (EST) strategy.Methods A directional cDNA library constructed from Schistosoma japonicum (Chinese strain ) adult stage RNA was used to generate expressed sequence tags(ESTs) and the ESTs obtained were compared against EMBL-parasites database and GenBank datebase by BLASTn and BLASTx.Results A total 200 phage clones were randomly selected for generating expressed sequence tags(ESTs).From these clones,we obtained 76 EST-quality sequence.A total of 7.9% of these EST-quality sequences were identified suquence of Schistosoma japonicum,while 5.3% were putatively identified sequence of Schistosoma japonicum.A total of 22.4% of these EST-quality sequences were putatively identified sequence of Schistosoma mansoni or other organisms,and 59.2% which had no matches in the database were classified as unknow sequence.Among these EST-quality sequences,66 ESTs were successfully submitted to the dbEST at GenBank.In addition,some interesting genes were found.Conclusion Partial cDNA sequencing to get expressed sequence tags(ESTs) was a rapid and economical method to discover new genes of adult stage Schistosoma japonicum(Chinese strain).

【基金】 中山医科大学“2 11”项目 (No .98169);国家自然科学基金 (NO .30 0 70 683)资助
  • 【文献出处】 中国人兽共患病杂志 ,Chinese Journal of Zoonoses , 编辑部邮箱 ,2001年06期
  • 【分类号】R383.24
  • 【被引频次】6
  • 【下载频次】56
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