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寡核苷酸DNA Microarray用于HLA DRB1基因分型的研究

Investigation of Genotyping HLA DRB1 Gene Using Oligoneucleotide Arrays

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【作者】 陈君男; 李瑶; 李亚莉; 秦红友; 李荣宇; 曹慧敏; 谢毅; 毛裕民;

【Author】 CHEN Jun Nan 1,LI YAO 1,LI Ya Li 1,QIN Hong You 2,LI Rong Yu 2, CAO Hui Min 2,XIE Yi 1① ,MAO Yu Min 1① (1. The National Key Laboratory of Genetic Engineering,Institute of Genetics of Fudan University,Shanghai 200433,China;2. Uni

【机构】 复旦大学遗传学研究所遗传工程国家重点实验室; 联合基因科技集团有限公司; 复旦大学;

【摘要】 对寡核苷酸DNAMicroarray用于HLADRB1基因分型的技术进行研究。常规的酚 /氯仿法提取标准血样基因组DNA ,在DRB1的exon 2区域设计一对引物 ,经PCR扩增基因组相应区段并用Cy5 dCTP进行标记。设计寡核苷酸分型探针 ,将探针固定在APS PDC法制作的DNAMicroarray上 ,用标记的PCR产物与之杂交 ,扫描仪对杂交结果进行扫描 ,Imagene软件对杂交图象进行分析。共检测了 33例标准血样的HLADRB1基因型。检测结果证明研制的DNAMicroarray准确、灵敏。DNAMicroarray技术可以有效地检测DRB1等位基因 ,对比常规的PCR SSP和PCR SSO方法、分型基因芯片方法更为直观 ,并有集成化优势

【Abstract】 We have developed a method performed on an oligoneucleotide array for genotyping HLA DRB1 . The routine method Phenol chloroform was used to extract genome DNA of standard samples. A pair of sense and antisense primers were designed according to the sequence of DRB1 exon2 ,then the primers and the Cy5 dCTP were used in the following PCR,thus the PCR products were labelled with Cy5. Many genotyping probes which were immobilized on the DNA Microarray made by APS PDC method were designed. The labelled PCR products were hybridized with them,the signals were sanned by sanner and analyzed by Imagene software. We have genotyped 33 standard samples which have 12 DRB1 subtypes. The experimental results showed that the arrays we made and the method we used are accurate and sensitive. This proved that the DNA Microarray technique is good for DRB1 genotyping. Compared with PCR SSP and PCR SSO methods,the genotyping chip method is more intuitionistic and has the advantage of integration.

【基金】 上海市科委研发基金资助项目~~
  • 【文献出处】 遗传学报 ,Acta Genetica Sinica , 编辑部邮箱 ,2001年10期
  • 【分类号】Q75
  • 【被引频次】19
  • 【下载频次】67
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