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水稻黑条矮缩病毒基因组片段S9的cDNA克隆和全序列分析
Cloning and Sequencing of the Genome Segment S9 of Rice Black streaked Dwarf Virus
【摘要】 应用RT PCR技术克隆了 3个中国水稻黑条矮缩病毒 (riceblack streakeddwarfvirus,RBSDV)分离株基因组片段S9,并测定了它们的全序列。结果表明 :RBSDV浙江分离株 (RBSDV Zj)基因组片段S9全长 190 0nt(EMBL登录号为AJ2 97430 ) ,RBSDV河北分离株 (RBSDV Heb)基因组片段S9全长 1898nt(EMBL登录号为AJ2 9742 9) ,湖北分离株S9全长 190 0nt(EMBL登录号为AJ2 9170 6 )。 3个分离株S9均含有两个开放阅读框(ORF) ,分别编码约 40kD和 2 4kD的多肽。3个中国分离株之间的核苷酸同源性高达 98.5 %~ 98.8% ,与日本分离株S9的核苷酸同源性均为 89.9%~ 90 .2 % ,而与意大利MRDVS8同源性仅为 85 .3%~ 86 .4%。我们发现ORF2十分保守 ,4个RBSDV分离株S9的ORF2同源性高达为 97.6 %~ 10 0 % ,与意大利MRDVS8的ORF2同源性也高达 94.3%。
【Abstract】 Genome segment S9’s of rice black streaked dwarf virus (RBSDV) of three Chinese isolates were amplified by RT PCR and sequenced, and were found to be consisted of 1 900 nt (RBSDV Zj S9 EMBL accession number: AJ297430), 1 898 nt ( RBSDV Heb S9 EMBL accession number: AJ297429) and 1 900 nt (RBSDV Hub S9 EMBL accession number: AJ291706), respectively. Genome segment S9’s of three Chinese Isolates shared 98.5%—98.8% sequence homology and all contained two open reading frames (ORF), which encoded two polypeptides with moleclular weights of 40 kD and 24 kD, respectively. Amino acid sequence comparison of the polypeptides encoded by the second ORF of the corresponding genomic segment of five isolates, including three Chinese isolates, Japanese isolate, and Italian MRDV (maize rough dwarf virus), were highly conserved.
- 【文献出处】 生物化学与生物物理学报 ,Acta Biochimica Et Biophysica Sinica , 编辑部邮箱 ,2001年04期
- 【分类号】Q943
- 【被引频次】11
- 【下载频次】141