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黄瓜线粒体DNA类质粒pC1的性质和核酸序列研究

Properties and Nucleotide Sequence of Mitochondrial Plasmid-like DNA pC1 of Cucumber

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【作者】 李俊英闻颖达张秀明高才昌

【Author】 LI Jun-Ying, WEN Ying-Da, ZHANG Xiu-Ming, GAO Cai-Chang (Institude for Molecular Biology, Nankai University, Tianjin 300071, China)

【机构】 南开大学分子生物学研究所!天津 300071

【摘要】 津研四号黄瓜线粒体中除主环DNA外,还有4种DNA类质粒:pC1、pC2、pC3、pC4。将环形类质粒pC1连到pUC19的EcoRI位点上,克隆至E. coli JM109中。以克隆的pC1为探针,进行同源性检测,pC1与津研四号黄瓜的核基因组、叶绿体基因组、线粒体基因组和线粒体中其他类质粒不同源。对pC1进行序列测定和分析,pC1长度2 889bp,含有多个正向和反向重复序列,有 3个 800bp以上的开放阅读框。在 GenBank的核酸和蛋白质数据库中检索,pC1与已知的植物线粒体类质粒和线粒体主DNA缺乏同源性,与E. coli等原核生物基因组有一定同源性,编码的蛋白与细菌、苔类植物和藻类的硫酸盐跨膜转运系统有同源性,提示pC1可能转录并编码功能蛋白。

【Abstract】 Four kinds of plasmid-like DNA, designated pC1, pC2, pC3 and pC4 were found in the mitochondrion of cucumber Jinyan No.4. The circle plasmid-like DNA pC1 was cloned into the Eco R I site of pUC19 using E. coli JM109 as host. The cloned pC1 DNA was isolated and used as probes in Southern analyses of total mitochondrial DNA, nuclear DNA and chloroplast DNA. Evidences were obtained that the pC1 did not show any homology with nuclear, chloroplast, main mitochondrial genomes and the other plasmid-like DNAs. Sequence analysis revealed that pC1 was 2889bp long. It contained many forward and reverse repeat sequences. Three main open reading frames in pC1 were longer than 800bp. Computer-assisted searching the nucleotide sequence in GenBank database revealed PC1 had no significant homology with known sequences of mitochondrial and plasmid-like DNA, but had homology with the E. coli, Mycobaterium tuberculosis and Anacystis nidulans genomes. The predicted proteins of PC1 main ORFs show homology with the sulfate transport system in bacteria. alga and liverwort. It suggested that pC1 may encode functional proteins.

【基金】 国家自然科学基金!批准号:397704144
  • 【文献出处】 遗传学报 ,ACTA GENETICA SINICA , 编辑部邮箱 ,2000年10期
  • 【分类号】Q943
  • 【被引频次】3
  • 【下载频次】78
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