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探讨rDNA ITS区作为果蝇Drosophila nasuta分子系统发育研究的价值
A Study of ITS Sequence as a Molecular Marker in the Phylogeny of Drosophila nasuta Subgroup
【摘要】 测定了果蝇nasuta亚群7个分类元和外群D .immigrans的核糖体基因转录间隔区 (ITS, intertranscribed spacer),包含5.8SrDNA和2S rDNA长约1.1kb的DNA片段序列。结 果表明:D.pallidifrons、Taxon L Tuon J享有共同的序列;D.albomicans则与D.s. neonasuta共享1个序列。序列之间存在少量的插入缺失和碱基替代。其中插入和缺失主要发 生内外群之间,内群中只有D.niveifrons发生1个碱基的插入和12个碱基的缺失以及D.s. sulfurigaster序列中1个碱基的缺失;而在包括外群在内的碱基替代中,共有55次转换,65次 颠换,转换/颠换值与动物线粒体基因组十分不同。采用简约法和邻接法构建这7个分类元 的系统发育关系。发现 D.niveifrons位于树的基部,与其他物种有较远的亲缘关系;D. albomicans、D. s. neonasuta、D. pallidifronss、Taxon I、Taxon J最接近,它们是亲缘关系最近的种类。讨论了D.s.sulfurigaster和D .s. neonasuta相互接?
【Abstract】 A total of 1.1kb including whole ITS (intertranscribed spacer), part of 5.8S rDNA and 2S rDNA were sequenced. The results reveal that D. pallidifrons, Taxon I and Taxon J share the same sequence, and D. albomicans and D. s. neonasuta have the other same one. Among the sequences, there were a handful of insertions, deletions and substitutions. Insertions and deletions occur mainly between outgroup and ingroups, yet only 1 insertion and 12 deletions were detected in D. niveifrons, and I deletion was found in D. s. suglfurigasterr. Among all the sustitutions in outgroup and ingroups, totally 55 transitions and 65 transvertions were detected. The value of transition transvertion is quite different to that of mitochondrial genome. We applied parsimony and NJ methods to reconstruct the phylogenetic relationships of the 7 taxa. They show that D. niveifrons is on the basis of the trees, which suggests that it be less related to the rest; D. albomicans, D. s. neonasuta, D. pallidifrons, Taxon I and Taxon J are more related. We suggested that more related topology of D. s. sulfurigaster and D. s. neonasuta due to the specific evolution of ITS, yet not meaning their real relationships. Sequence variations and phylogeny analysis reveal that the ITS may be not an informative marker to nasuta subgroup. However, sencondary structure analysis by using PCFOLD 4.0 reveals that the structure of the ITS is quite conservative, the stem-1oop of ITS 3’-end may be an important structure of rDNA splicing.
【Key words】 Drosophila nasuta subgroup; ribosome DNA; ITS (intertranscribed spacer), phylogenetic tree; RNA secondary structure;
- 【文献出处】 遗传学报 ,ACTA GENETICA SINICA , 编辑部邮箱 ,2000年01期
- 【分类号】Q953
- 【被引频次】24
- 【下载频次】220