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山东省HIV-1流行毒株的基因特征和系统树分析

Genetic Characterization and Phylogenetic Analysis of HIV-1 Strains in Shandong province

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【作者】 刘传新邢辉苏生利潘品良黄涛范秀娟冯毅傅继华邵一鸣

【Author】 Liu Chuanxin, Xing Hui, Su Shengli, Pan Pinliang, et al. Shandong Sanitation and Anti ?epidemic Station, Jinan 250014

【机构】 山东省卫生防疫站卫生部艾滋病预防与控制中心卫生部艾滋病预防与控制中心 济南市 250014济南市 250014济南市 250014

【摘要】 从13名山东省HIV感染者的淋巴细胞(PBMC)中提取前病毒DNA,使用套式PCR方法扩增HIV-lenv基因的C2-V3区。经序列分析发现13份样品均为B′,亚型(泰国B亚型),其与国际参考序列Bcon、泰国代表株93th067A、中国云南省代表株RL42、云南省共享序列96Yn-Bcon的基因离散率分别为7.31%、5.72%、4.25%、3.76%,而远离其它亚型。由系统树可以更清楚看到13个毒株全部与93th067A、RL42等B,亚型流行株聚在一起。通过GCG软件包计算这些毒株彼此间的基因离散率的变异系数为2.71%。以上数据提示HIV-1在山东省的流行时间不长。且与云南省相同亚型的HIV-1毒株密切相关。

【Abstract】 The provirus DNA were extracted from the peripheral blood mononuclear cell (PBMCs) in HIV-1 infective individuals of Shandong province, and C2-V3 of the env gene were amplified by nested-PCR and sequenced directly. Sequence analysis showed that all of them were subtype HIV-1 B strains(Thailand B). The average genetic distances between the 13 strains and the international reference strains were 7.31%(Bcon, international consensus sequence), 5.72%(93th067A, Thailand strains), 4.25%(RL42, Yunnan strain in China), 3.76%(96Yn-Bcon, Yunnan consensus sequence), respectively. On the phylogenetic tree, all of them clustered with B subtype strains 93th067A and RL42. The genetic divergence innergroup was 2.71%. The above data suggests that the time of recent epidemic of HIV-1 in Shandong be not long and responsible virus very close to those identified in Yunnan province.

  • 【文献出处】 中国艾滋病性病 ,Journal for China AIDS/STD , 编辑部邮箱 ,1999年05期
  • 【分类号】R346
  • 【被引频次】6
  • 【下载频次】66
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