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HEV基因分型代表性片段筛选的记分法

A score method for comparison of partial genomic regions in their representatives of full-length genome of Hepatitis E virus for genotyping

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【作者】 荀鹏程陈峰董晨钱国华赖德建孟继宏

【Author】 Pengcheng Xun~a Feng Chen~a Chen Dong~b Guohua Qian~a Dejian Lai~c Jihong Meng~b (Department of Epidemiology & Biostatistics,School of Public Health,Nanjing Medical University,Nanjing,Jiangsu,P.R.China; b Department of Microbiology & Immunology,School of Medicine,Southeast University,Nanjing,Jiangsu,P.R.China; c Division of Biostatistics,School of Public Health,The University of Texas,Houston,TX,77030,USA.)

【机构】 南京医科大学公共卫生学院东南大学医学院美国德州大学公共卫生学院

【摘要】 为比较片段对 HEV 全序列基因分型的代表性,本文构建了“记分法”并通过 Monte Carlo 模拟获取了记分统计量的经验分布并用于假设检验,结果显示“片段Ⅲ可以代表全序列用于 HEV 基因分型”,且获得了生物信息分析的支持。“记分法”是一种思维朴素、有效实用的 HEV 基因分型代表性片段筛选的统计学方法。

【Abstract】 To develop a statistical method for comparison of partial genomic regions in their representatives of full-length genome of Hepatitis E virus for genotyping,a score method was constructed to compare the candidate fragments with the whole genome through Monte Carlo simulation.It was statistically indicated that fragment Ⅲ might be a representative region of the whole genome of Hepatitis E Virus for genotyping, which was verified by the subsequent bioinformatical analysis.It may be concluded from this study that the score method is a simple,effective and practical one for comparing partial genomic regions with full-length genome of HEV strains for genotyping.

  • 【会议录名称】 中国现场统计研究会第十三届学术年会论文集
  • 【会议名称】中国现场统计研究会第十三届学术年会
  • 【会议时间】2007-08
  • 【会议地点】中国广西北海
  • 【分类号】R346
  • 【主办单位】中国现场统计研究会
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