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驯鹿β-防御素reBD-1全长cDNA的扩增及序列分析
Rapid Amplifications and Analysis of the Full-length cDNA of Reindeer β-defensin caBD-1
【Author】 Yang Yin-feng Hao Yong-feng Du Ge-er si ren (Laboratory of Animal Embryo and developmental biology, Inner Mongolia Agriculture University Huhhot 010018)
【机构】 内蒙古农业大学动物胚胎与发育生物学研究室;
【摘要】 为了获得驯鹿β-防御素reBD-1全长cDNA序列,根据已获得的reBD-1 cDNA的已知序列设计一条序列特异性引物作为上游引物,反转录引物中的部分序列即3’接合器引物作为下游引物,克隆reBD-1 cDNA的3’末端序列。另外,采用反向嵌套PCR RACE法,根据reBD-1 cDNA的已知序列,设计一条5’未端磷酸化的特异性反转录引物和两对特异性反向嵌套PCR引物,首先进行反转录(RT),然后将mRNA反转录成的cDNA 进行环化,最后进行反向嵌套巢式PCR,克隆reBD-1 cDNA的5’末端序列。结果成功的克隆出了reBD-1 cDNA 的3’和5’未端序列,从而得到372 bp的reBD-1 cDNA全序列,其中包含44bp 5’非翻译区(UTR)、192bp 的开放读码框(ORF)、终止密码子TAA、118bp的3’UTR和poly(A)15。reBD-1 cDNA全序列的获得为进一步研究其基因结构、基因表达和基因功能奠定了基础。
【Abstract】 In order to obtain the full-length cDNA, we cloned the 3’cDNA end of reindeer β-defensin (reBD-1) using anchored PCR RACE with a sequence specific primer designed basing on the known reBD-1cDNA sequence as upper primer and 3’sites adaptor primer as down primer. In addition, the 5’cDNA end was amplified using inverse nestd PCR with a specific RT primer whose 5’end is phosphated and two pairs specific inverse nested PCR primers, which are designed basing on the known reBD-1 cDNA sequence. The reBD-1 cDNA which come from reBD-1 mRNA by RT was encircled, then inverse nestd PCR is performed. The results indicate 3’and 5’cDNA end were amplified successfully. The full-length reBD-1 cDNA is 372bp and includes an 5’untranslated region (UTR) of 44 bp, a open reading frame(ORF)of 192bp, a stop codon of TAA, 3’ UTR and ploy(A)15. The obtaining of full-length reBD-1 cDNA is the essential foundation for the research on gene structures, gene expressions and gene functions.
【Key words】 Inverse nestd PCR; 5’ RACE; 3’ RACE; β-defensin; reindeer;
- 【会议录名称】 中国畜牧兽医学会动物解剖学及组织胚胎学分会第十四次学术研讨会论文集
- 【会议名称】中国畜牧兽医学会动物解剖学及组织胚胎学分会第十四次学术研讨会
- 【会议时间】2006-08
- 【会议地点】中国湖北武汉
- 【分类号】S865
- 【主办单位】中国畜牧兽医学会动物解剖学及组织胚胎学分会、华中农业大学