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PCR-DGGE技术在水牛瘤胃产甲烷古菌多样性探索中的应用
Application of PCR-DGGE technique in molecular diversity exploration of methanogenic archaealiving in bufflos’s rumen
【Author】 Liu Yuanyuan,Wang Shichang~* (College of Animal Science and Technology of Guangxi University,Nanning,Guangxi 530005)
【机构】 广西大学动物科学技术学院;
【摘要】 采集16头广西本地沼泽型水牛瘤胃内容物,提取总DNA,利用产甲烷古菌通用引物扩增I6SrRNA基因序列,进行DGGE分析。将DGGE凝胶上7条优势条带进行回收克隆测序,得到9条序列,其中3条与甲烷短杆菌(Methanobrevibacter)的同源性也高达99%。1条与甲烷短杆菌的同源性达98%,1条序列与广古菌门(Euryarchaeota)热原体目(Thermoplasmatales)的同源性达98%。另外,有4条是和古菌存在序列相似性的未培养细菌,分别属于拟杆菌(Bacteroidetes),厚壁菌(Firmicutes),变形菌门(Proteobacteria.),几个细菌门类之间无太大同源性。
【Abstract】 collected rumen contents from sixteen local swamp Buffalo in Guangxi,extracted total DNA,used the universal primers amplified methanogenic archaea hypervariable region of 16S rRNA gene sequences,and did DGGE analysis. Seven superiority bands were carriy on clone and then nine sequences were obtained.There were three sequences had homology with Methanobrevibacter as high as 99%,one sequence had homology with Methanobrevibacter was 98%,and one sequence unclassified in Euryarchaeota had 98%homology with Thermoplasmatales.In addition,four sequences which were similar with methanogenic archaea were uncultured bacteria,belonging to Bacteroidetes Firmicutes and Proteobacteria.But these bacterium classes does not have the big homology
- 【会议录名称】 第四届第十次全国学术研讨会暨动物微生态企业发展战略论坛论文集(下册)
- 【会议名称】第四届第十次全国学术研讨会暨动物微生态企业发展战略论坛
- 【会议时间】2010-08-01
- 【会议地点】中国河北沧州
- 【分类号】S823
- 【主办单位】中国畜牧兽医学会动物微生态学分会(Branch of Animal Microecology,CAAV)