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基于TaqMan-MGB探针定量检测急性髓系白血病和慢性中性粒细胞白血病CSF3RT618I突变

Quantitative Detection of CSF3RT618I Mutation in Acute Myeloid Leukemia and Chronic Neutrophilic Leukemia Based on TaqMan-MGB Probes

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【作者】 廖明玥龙玲玉焦瑶赵鸣悦闫楠周亚兰韩朝悦杨阳赵晓甦常英军黄晓军阮国瑞

【Author】 LIAO Ming-Yue;LONG Ling-Yu;JIAO Yao;ZHAO Ming-Yue;YAN Nan;ZHOU Ya-Lan;HAN Zhao-Yue;YANG Yang;ZHAO Xiao-Su;CHANG Ying-Jun;HUANG Xiao-Jun;RUAN Guo-Rui;Peking University People’s Hospital,Peking University Institute of Hematology,National Clinical Research Center for Hematologic Disease,Beijing Key Laboratory of Cell and Gene Therapy for Hematologic Malignancies;Peking-Tsinghua Center for Life Sciences,Academy for Advanced Interdisciplinary Studies;

【通讯作者】 阮国瑞;

【机构】 北京大学人民医院,北京大学血液病研究所,国家血液系统疾病临床医学研究中心,血液肿瘤细胞和基因治疗北京市重点实验室北大-清华生命科学联合中心,前沿交叉学科研究院

【摘要】 目的:研发一种新的基于TaqMan-MGB探针的实时荧光定量聚合酶链式反应(qPCR)检测方法,用于急性髓系白血病(AML)和慢性中性粒细胞白血病(CNL)患者CSF3RT618I突变的初筛和随访监测。方法:利用PrimerExpressv3.0软件设计特定的引物和探针,并根据野生型(CSF3Rwt)和突变型(CSF3RT618I)基因组DNA序列构建质粒标准品,绘制标准曲线,用于定量检测CSF3RT618I突变。DNA样本来源于421例AML患者和12例CNL患者。结果:成功建立了一种利用TaqMan-MGB探针定量检测CSF3RT618I突变的方法。在野生型背景下,CSF3RT618I突变的检测灵敏度可达0.625%。本研究队列中,AML患者的CSF3RT618I突变检出率为3.33%(14/421),CNL患者的突变检出率为83.33%(10/12),与高深度靶区测序(TRS)和Sanger测序的结果高度一致。20名健康供者中均未检测到CSF3RT618I突变。利用标准曲线计算突变阳性的CNL患者CSF3RT618I等位基因突变频率平均值为(38.90±15.20)%,高于突变阳性AML患者的平均值[(21.72±16.11)%,P=0.015]。结论:基于TaqMan-MGB探针的qPCR是一种简便、灵敏的定量检测方法,可用于筛查CNL或AML患者中的CSF3RT618I突变,有助于疾病的诊断以及治疗反应的监测。

【Abstract】 Objective:To develop a new TaqMan-MGB probe based quantitative real-time polymerase chain reaction(qPCR) assay for primary screening and follow-up monitoring of colony-stimulating factor 3 receptor(CSF3R) T618I mutation in patients with acute myeloid leukemia(AML) and chronic neutrophilic leukemia(CNL).Methods:Specific primers and probes were designed using the Primer Express v3.0 software,and plasmid standards were constructed based on the wild-type(CSF3Rwt) and mutant(CSF3RT618I) genomic DNA sequences.Standard curve was plotted for the quantitative detection of the hot spot mutation of CSF3RT618I.DNA samples were obtained from 421 AML and 12 CNL patients.Results:A novel qPCR system based on TaqMan-MGB probes for the quantitative detection of the CSF3RT618Imutation was successfully established.The predicted sensitivity level was at least 0.625% for CSF3RT618I mutant allele in a wild-type background.The detection rate of CSF3RT618I mutation in our cohort was 3.33%(14/421) in AML patients and 83.33%(10/12) in CNL patients,which was highly consistent with the results of high-depth target regional sequencing(TRS) and Sanger sequencing.No CSF3RT618I mutation was detected in 20 healthy donors.The mean variant allele frequency(VAF) of CSF3RT618I in mutation-positive CNL patients calculated using the standard curve was(38.90±15.20) %,which was significantly higher than that in mutation-positive AML patients [(21.72±16.11) %,P=0.015].Conclusion:The innovative TaqMan-MGB probe-based qPCR methodology is a reliable,sensitive,and quantitative assay for the detection of CSF3RT618I mutation in patients with CNL and AML.This approach promises to facilitate the diagnosis of these diseases and enhance the monitoring of therapeutic response.

【基金】 国家自然科学基金(82570203);国家自然科学基金重点项目(82293630);国家重点研发计划(2022YFA1103300)
  • 【文献出处】 中国实验血液学杂志 ,Journal of Experimental Hematology , 编辑部邮箱 ,2026年02期
  • 【分类号】R733.71
  • 【下载频次】34
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