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基于流式细胞术和基因组Survey分析的地稍瓜基因组研究

Estimation of Cynanchum thesioides Genome Size Based on Flow Cytometry and Genome Survey Analysis

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【作者】 宋中旭陈虞超甘晓燕田莉郭生虎

【Author】 SONG Zhongxu;CHEN Yuchao;GAN Xiaoyan;TIAN Li;GUO Shenghu;College of Pharmacy,Guangxi University of Chinese Medicine;Agricultural Biotechnology Centre,Ningxia Academy of Agriculture and Forestry Sciences;Ningxia Key Laboratory of Agricultural Biotechnology;

【通讯作者】 郭生虎;

【机构】 广西中医药大学药学院宁夏农林科学院农业生物技术研究中心宁夏农业生物技术重点实验室

【摘要】 为揭示地稍瓜染色体核型及基因组大小,为全基因组测序提供借鉴。采用荧光原位杂交对地稍瓜染色体进行核型分析,并以番茄(Solanum lycopersicum L.)基因组作为内参,采用流式细胞术对地稍瓜基因组大小进行评估,并结合高通量测序技术对地稍瓜进行基因组Survey分析,对其基因组大小、重复序列、杂合度及GC含量等特征信息进行评估。结果表明,地稍瓜染色体数为2n=2x=24,长0.5~1.5μm,为二倍体。估算其基因组大小约为163.60~215.04 Mb,重复序列比为44.05%,杂合度约1.68%,GC含量为34.16%,表明地稍瓜基因组属于高杂合的复杂基因组。

【Abstract】 To reveal the chromosome karyotype and genome size of Cynanchum thesioides and provide a reference for whole-genome sequencing, fluorescence in situ hybridization(FISH) was used for karyotype analysis of Cynanchum thesioides chromosomes. Using the genome of tomato(Solanum lycopersicum L.) as an internal reference, flow cytometry was employed to estimate the genome size of Cynanchum thesioides. Combined with high-throughput sequencing technology, a genome survey analysis was conducted to evaluate key genome characteristics, including genome size, repetitive sequence ratio, heterozygosity rate, and GC content. The results showed that the chromosome number of Cynanchum thesioides is 2n=2x=24, with chromosome lengths ranging from 0.5 to 1.5 μm, indicating it is a diploid species. The estimated genome size is approximately 163.60~215.04 Mb, with a repetitive sequence ratio of 44.05%, a heterozygosity rate of approximately 1.68%, and a GC content of 34.16%. These findings indicate that the genome of Cynanchum thesioides is a complex genome with high heterozygosity.

【基金】 农业高质量发展和生态保护科技创新示范项目“特色资源植物利用与沙产业技术研发”(NGSB-2021-9);科技基础资源调查专项(2024FY100700)
  • 【文献出处】 耕作与栽培 ,Tillage and Cultivation , 编辑部邮箱 ,2026年02期
  • 【分类号】S567.239
  • 【下载频次】11
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