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济南市新确证HIV-1型感染者的分子传播网络特征分析

Analysis of molecular transmission network characteristics of newly confirmed HIV-1 infection in Jinan

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【作者】 韩莹潘晶赵帅滕婉莹李欣王美花黄玉洁韩秀云李新蕊刘岚铮

【Author】 HAN Ying;PAN Jing;ZHAO Shuai;TENG Wan-ying;LI Xin;WANG Mei-hua;HUANG Yu-jie;HAN Xiu-yun;LI Xin-rui;LIU Lan-zheng;Jinan Center for Disease Control and Prevention;

【通讯作者】 李新蕊;刘岚铮;

【机构】 济南市疾病预防控制中心山东省疾病预防控制中心

【摘要】 目的 分析济南市新确证人类免疫缺陷病毒1型(human immunodeficiency virus type 1, HIV-1)感染者传播关系的分子网络特征,为疫情流行趋势和防治提供依据。方法 收集济南市2021年新报告的感染HIV-1的血液样本168份,通过巢式PCR扩增HIV-1的pol区基因,采用neighbor-joining方法构建进化树,基因距离<1.5%构建分子网络,对网络的相关因素进行分析。通过美国斯坦福大学HIV耐药数据库在线软件工具分析耐药突变位点。结果 168份样本序列共9个亚型,优势亚型主要为两个流行重组型(circulating recombinant form, CRF),CRF01_AE亚型(41.7%,70/168)和CRF07_BC亚型(36.3%,61/168),其他亚型有B、CRF68_01B、CRF55_01B、CRF65_CPX、CRF67_01B、CRF96_CPX及C亚型。在基因距离为1.50%时,共形成了15个分子簇,入网序列共51条,入网率为30.4%。7份样本存在监测性耐药突变(surveillance drug-resistance mutations, SDRM),耐药传播率为4.2%,集中为核苷类反转录酶抑制剂和非核苷类反转录酶抑制剂耐药位点突变。结论 济南市HIV-1亚型丰富,主要为CRF01_AE和CRF07_BC亚型。应构建分子传播网络对济南市进行长期监测,以采取针对性的措施阻断其传播。

【Abstract】 Objective To analyze the molecular network characteristics of the transmission relationship of newly confirmed human immunodeficiency virus type 1(HIV-1) infection in Jinan, to provide basis for epidemic trend and prevention. Methods A total of 168 blood samples newly reported to be infected with HIV-1 in Jinan in 2021 were collected. The pol region gene of HIV-1 was amplified by nested PCR, the evolutionary tree was constructed by neighbor-joining method, and the molecular network was constructed by gene distance < 1.5%. The related factors of the network were analyzed. The mutation sites of drug re-sistance were analyzed by the online software tool of HIV drug resistance database of Stanford University. Results There were 9subtypes in the sample sequence. The dominant subtypes were two epidemic recombination types circulating recombinant form(CRF), CRF01_AE subtype(41.7%, 70/168), and CRF07_BC subtype(36.3%, 61/168). The other subtypes were B, CRF68_01B,CRF55_01B, CRF65_CPX, CRF67_01B, CRF96_CPX, and C. When the gene distance was 1.50%, a total of 15 molecular clusters were formed, with a total of 51 sequences, and the network entry rate was 30.4%. Surveillance drug-resistance mutations(SDRM) were monitored in 7 samples, with drug resistance transmission rate of 4.2%, focusing on drug resistance site mutations of nucleoside reverse transcriptase inhibitors and non-nucleoside reverse transcriptase inhibitors. Conclusion There are abundant HIV-1 subtypes in Jinan, mainly CRF01_AE and CRF07_BC subtypes. A molecular transmission network should be established for long-term monitoring to take targeted measures to block its spread.

  • 【文献出处】 现代预防医学 ,Modern Preventive Medicine , 编辑部邮箱 ,2024年01期
  • 【分类号】R512.91;R181.3
  • 【下载频次】55
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