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基于重测序鉴定GbTMEM214基因在陆地棉基因组的插入位点

Identification of GbTMEM214 insertion site in Gossypium hirsutum genome based on resequencing

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【作者】 程俊凌赵亮徐剑文刘剑光徐鹏徐珍珍郭琪王月平赵君沈新莲陈全家肖松华

【Author】 Cheng Junling;Zhao Liang;Xu Jianwen;Liu Jianguang;Xu Peng;Xu Zhenzhen;Guo Qi;Wang Yueping;Zhao Jun;Shen Xinlian;Chen Quanjia;Xiao Songhua;College of Agriculture, Xinjiang Agricultural University/Engineering Research Centre of Cotton, Ministry of Education;Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences/Key Laboratory of Cotton and Rapeseed, Ministry of Agriculture and Rural Affairs;

【通讯作者】 陈全家;肖松华;

【机构】 新疆农业大学农学院/棉花教育部工程研究中心江苏省农业科学院经济作物研究所/农业农村部长江下游棉花与油菜重点实验室

【摘要】 【目的】利用农杆菌介导法获得了转GbTMEM214基因陆地棉品系,旨在明确转基因棉花株系中T-DNA插入位点的序列特征及检测方法,为其生物安全评价提供依据。【方法】基于基因组重测序技术,利用BLASTn将测序数据与陆地棉TM-1基因组序列进行比对分析,设计特异性引物通过聚合酶链式反应(polymerase chain reaction, PCR)验证插入位点。【结果】携带目标基因GbTMEM214的T-DNA整合在陆地棉基因组D13号染色体57 019 068~57 019 106 bp,T-DNA插入导致受体基因组37 bp的片段缺失;通过PCR扩增获得携带Gb TMEM214基因的T-DNA插入位点的侧翼序列,由此建立了转GbTMEM214基因棉花的特异性检测方法。【结论】基于基因组重测序技术获得了转Gb TMEM214基因棉花的T-DNA插入位点及侧翼序列信息,可为转基因棉花的生物安全评价提供技术参考。

【Abstract】 [Objective] Gb TMEM214 transgenic Gossypium hirsutum line, obtained using Agrobacterium-mediated method, was used to clarify the sequence characteristics and detection methods of the T-DNA insertion site, and further promote its biosafety evaluation. [Methods] Based on the genome resequencing technology, the sequencing data was compared with the G. hirsutum standard line TM-1 genome sequence by BLASTn, and specific primers were designed to verify the insertion site by polymerase chain reaction(PCR). [Results] The T-DNA carrying the target gene GbTMEM214 was integrated into the position of 57019 068-57 019 106 bp on chromosome D13 of G. hirsutum genome, resulting in 37 bp deletion of cotton genome. Combined with the flanking sequence of T-DNA insertion site obtained by PCR amplification, the specific detection method for GbTMEM214 transgenic cotton was established. [Conclusion] The T-DNA insertion site and flanking sequence of GbTMEM214 transgenic cotton was obtained based on genome resequencing technology, which can provide technical reference for biosafety evaluation of the transgenic cotton.

【基金】 农业生物育种重大项目(2023ZD04039-02-04);国家自然科学基金(31971904,31401727)
  • 【分类号】S562
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