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基于计算机视觉算法的酵母单细胞体积与生长速率监测研究

Monitoring Cell Volume and Growth Rate of Budding Yeast Based on Computer Vision Algorithm

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【作者】 闵嘉宁耿玉露生海肖秦刘可王颖瀛朱真

【Author】 MIN Jianing;GENG Yulu;SHENG Hai;XIAO Qin;LIU Ke;WANG Yingying;ZHU Zhen;School of Electronic Science and Engineering, Nanjing University;School of Integrated Circuits, Southeast University;Nanjing Foreign Language School;

【机构】 南京大学电子科学与工程学院东南大学集成电路学院南京外国语学校

【摘要】 酿酒酵母作为经典的模式细胞,常被用于衰老研究。高通量微流控芯片作为酵母细胞增殖衰老过程长期监测分析平台,通常需面对大量图像数据处理问题。为了解决酵母单细胞形态参数提取图像处理算法中计算体量大、数据容错低的问题,提出了一种基于计算机视觉的优化算法,通过Canny边缘检测、Hough变换、形态学运算和线性插值等步骤,针对微捕获单元中酵母细胞轮廓提取误差和处理效率进行了优化。利用所提算法实现了高精度自动化酵母细胞体积参数提取和生长速率分析,探究了细胞复制衰老过程中体积的动态变化及其与复制寿命的相关性。

【Abstract】 Budding yeast, the scientific name of which is Saccharomyces cerevisiae, is a typical model organism for cell aging studies. High-throughput microfluidic devices, as long-term monitoring and analysis platforms to investigate cell dynamics along yeast replicative aging, usually encounter challenges in processing high-throughput micrographs. To address the challenges, such as the substantial computational load and limited data tolerance in image processing for extracting single-cell morphological parameters of budding yeast, an algorithm based on computer vision is proposed to extract mother-cell contours in single-cell traps. The algorithm integrates Canny edge detection, Hough transform, morphological operations, and linear interpolation. Several tailored optimizations have been implemented to deal with errors in contour extraction and enhance overall efficiency in image processing. Furthermore, the proposed algorithm is utilized to achieve high-precision automated extraction of cell volume and growth rate of budding yeast, and analyze the dynamic changes in cell volume during the process of yeast replicative aging and its correlation with replication lifespan.

【基金】 中央高校基本科研业务费专项资金项目(3206002107D);国家自然科学基金面上项目(61774036)
  • 【文献出处】 电子器件 ,Chinese Journal of Electron Devices , 编辑部邮箱 ,2024年03期
  • 【分类号】Q2-33;TP391.41
  • 【下载频次】21
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