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高灵敏微滴式数字PCR检测低水平JAK2V617F突变

Highly Sensitive Droplet Digital PCR for Detection of Low-level JAK2V617F Mutation

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【作者】 龙玲玉周亚兰焦瑶叶林海李修春刘艳荣黄晓军阮国瑞

【Author】 LONG Ling-yu;ZHOU Ya-lan;JIAO Yao;YE Lin-hai;LI Xiu-chun;LIU Yan-rong;HUANG Xiao-jun;RUAN Guo-rui;Peking University People’s Hospital, Peking University Institute of Hematology, National Clinical Research Center for Hematologic Disease,Beijing Key Laboratory of Hematopoietic Stem Cell Transplantation, Peking University;Sniper Medical Technology Co., Ltd.;Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University;

【通讯作者】 周亚兰;阮国瑞;

【机构】 北京大学人民医院北京大学血液病研究所国家血液系统疾病临床医学研究中心北京市造血干细胞移植重点实验室苏州思纳福医疗科技有限公司北大-清华生命科学联合中心

【摘要】 目的:建立一种检测低水平JAK2V617F突变的微滴式数字PCR(droplet digital PCR, ddPCR)方法并探讨其在骨髓增殖性肿瘤(myeloproliferative neoplasm, MPN)中的应用价值。方法:利用位点特异性的TaqMan-MGB探针,建立用于检测基因组DNA中JAK2V617F突变的ddPCR方法,应用该方法、实时定量PCR及二代测序方法检测MPN患者JAK2V617F突变,比较不同方法检测结果的一致性。结果:成功建立了一种基于特异性TaqMan-MGB探针检测JAK2V617F突变的ddPCR方法,检测灵敏度至少为0.05%。应用ddPCR方法及实时定量PCR方法对82份MPN患者及8份健康对照者的骨髓或外周血DNA样本同时进行检测,其中87份样本检测结果一致,检出的一致率为96.7%;3份经实时定量PCR方法检测为阴性而ddPCR检测为阳性的样本,ddPCR的定量结果分别为0.015%、0.002%、0.039%,均低于实时定量PCR的检出下限;对于两种方法检测结果均为阳性的52份样本,其定量数据的相关系数为0.971 4(P<0.000 1)。11例样本同时采用二代测序的方法进行验证,两者定量结果的相关系数为0.983 9(P<0.000 1)。结论:利用特异性TaqMan-MGB探针检测JAK2V617F突变的微滴式数字PCR方法可便捷、准确地检测JAK2V617F突变,该方法具有高度的灵敏度且可绝对定量,在JAK2V617F突变的筛查及动态监测中具有潜在应用价值。

【Abstract】 Objective: To establish a droplet digital PCR(ddPCR) method for detecting the low-level JAK2V617F mutation and to explore its application value in the diagnosis of myeloproliferative neoplasm(MPN). Methods: Site-specific TaqMan-MGB probes were used to establish the ddPCR method for detecting the JAK2V617F mutation in genomic DNA. JAK2V617F mutations were detected by ddPCR, real-time quantitative PCR and next-generation sequencing(NGS). The consistency of the detection results of different methods was compared. Results: The ddPCR method for detecting the JAK2V617F mutation based on specific TaqMan-MGB probes was successfully established, and the detection sensitivity was at least 0.05%. The ddPCR method and qPCR method were used to detect the JAK2V617F mutation in 82 subjects with MPN and 8 healthy controls. The consistency rate was 96.7%. For the 52 samples with positive results by both methods, the correlation coefficient of quantitative data was 0.971 4(P<0.000 1). Eleven samples were verified by NGS and the correlation coefficient between the two quantitative results was 0.983 9(P<0.000 1). Conclusions: The ddPCR with the specific TaqMan-MGB probe method can detect the JAK2V617F mutation conveniently and accurately, which may have potential application value in the screening and dynamic monitoring of the JAK2V617F mutation.

【基金】 国家自然科学基金(82100169)资助项目
  • 【文献出处】 中国生物工程杂志 ,China Biotechnology , 编辑部邮箱 ,2023年12期
  • 【分类号】R733.3
  • 【下载频次】21
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