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血清中hsacircRNA103191绝对荧光定量PCR方法的构建及应用

Establishment and application of an absolute fluorescence quantitative PCR method for hsacircRNA103191 in serum

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【作者】 严家来方安宁丁艳常文雅潘思梦

【Author】 YAN Jia-lai;FANG An-ning;DING Yan;CHANG Wen-ya;PAN Si-meng;Anhui Medical College;Southeast University;Hefei China Medical Labs Co.,Ltd;Hefei Dean Diagnostics Co.,Ltd;

【机构】 安徽医学高等专科学校医学技术学院安徽医学高等专科学校基础医学院东南大学医学院病原生物学与免疫学系合肥千麦医学检验实验室有限公司合肥迪安医学检验实验室有限公司

【摘要】 目的:建立准确定量血清中hsacircRNA103191的绝对反转录荧光定量PCR(RT-qPCR)方法,并在肝癌患者外周血清中验证hsacircRNA103191的拷贝数。方法:提取肝癌患者肿瘤组织和血清中的总RNA,反转录获得cDNA,再以cDNA为模板,PCR法扩增出包含反向剪接位点的hsacirc RNA103191的119bp特异性片段,克隆到T载体中,经蓝白斑筛选,测序鉴定重组质粒。对重组质粒进行梯度稀释成标准品。采用SYBR荧光染料法进行扩增,建立标准曲线,在肝癌患者外周血中验证hsacircRNA103191的copies。结果:肝癌患者外周血清中游离的总RNA较肝癌组织中总RNA降低(t=10.95,p<0.0001)。建立了能准确定量血清中GAPDH和hsacircRNA103191拷贝数的RT-qPCR方法,使用该定量方法能检测血清中GAPDH和hsacircRNA103191的表达。结论:建立了检测hsacircRNA103191的绝对荧光定量RT-qPCR方法,该法检测线性范围广,灵敏度、特异性、重复性均良好,可为血清中circRNA精确定量提供参考方法。

【Abstract】 Objective: to establish an absolute reverse transcription fluorescence quantitative PCR method(RT-qPCR) that can accurately quantify hsacircRNA 103191 in serum, and verify the copy number of hsacircRNA103191 in peripheral blood serum of patients with primary hepatic carcinoma(PHC). Methods: Total RNA was extracted from tumor tissue and serum of patients with PHC,and cDNA was abtained by reverse transcription. The 119 bp specific fragment containing the back-spliced junction of hsacircRNA103191 was amplified by PCR using cDNA as template, and cloned into T vector, and then the recombinant plasmid was sequenced after blue and white spot screening. Using the gradient diluted recombinant plasmid as standard substance, the standard curve of hsacircRNA 103191 was established by RT-qPCR method. At last the copy number of hsacircRNA 103191 in peripheral blood of patients with PHC was verified. Results: The free total RNA in peripheral blood of patients with PHC was lower than that in PHC tissues(t=10.95,P<0.0001).The absolute RT-qPCR method was established that can accurately quantify the copy number of GAPDH and hsacircRNA103191.The expression of GAPDH and hsacircRNA103191 in serum can be detected by this method. Conclusion: The absolute RT-qPCR method for the detection of hsacircRNA103191 was established and had a wide linear range, high sensitivity and specificity, and good repeatability, and could be used as a reference method for the accurate quantification of circRNAs in serum.

【基金】 安徽医学高等专科学校科研项目“环状RNA PITPNB作为肝癌分子标志物的研究”(YZ2020ZR003);安徽省高校自然科研重点项目“环状RNA PITPNB作为肝癌分子标志物及其调控机制研究”(KJ2020A0853);安徽省教育厅质量工程项目“安徽医专-合肥千麦校企合作实践基地”(2020sjjd067);安徽省教育厅质量工程项目“医学检验技术高水平专业群”(2020zyq41)
  • 【文献出处】 新余学院学报 ,Journal of Xinyu University , 编辑部邮箱 ,2022年01期
  • 【分类号】R735.7
  • 【下载频次】262
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