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青海高原藏系绵羊鼠疫菌系统发育关系和流行特征的研究

Study on the phylogenetic relationship and epidemic characteristics of Tibetan sheep Yersinia pestis in Qinghai Plateau

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【作者】 熊浩明靳娟辛有全何建杨晓艳王宇萌王文龙刘中凯魏柏青代瑞霞李伟张强

【Author】 XIONG Hao-ming;JIN Juan;XIN You-quan;HE Jian;YANG Xiao-yan;WANG Yu-meng;WANG Wen-long;LIU Zhong-kai;WEI Bai-qing;DAI Rui-xia;LI Wei;Zhang Qiang;Plague Prevention and Control Section of Qinghai Provincial Institute for Endemic Disease Prevention and Control;Specialized Laboratory of Plague Bacteria of Qinghai Provincial Institute for Endemic Disease Prevention and Control;Institute for Infectious Disease Control and Prevention,Chinese Center for Disease Control and Prevention;Department of Endemic Disease Prevention and Control,Qinghai Institute for Endemic Disease Prevention and Control;

【通讯作者】 代瑞霞;李伟;张强;

【机构】 青海省地方病预防控制所鼠疫预防控制科青海省地方病预防控制所鼠疫菌专业实验室北京中国疾病预防控制中心传染病预防控制所青海省地方病预防控制所地方病预防控制科

【摘要】 目的 对青海高原藏系绵羊引发的人间鼠疫疫情流行病学和相关鼠疫菌遗传特征进行研究,为制定出适合青海省藏系绵羊鼠疫防控提供科学依据。方法 汇总分析青海省1958―2020年藏系绵羊引发的人间鼠疫疫情资料,描述其时间、地区和人群分布及其他流行病学特征;对38株分离自人、藏系绵羊和喜马拉雅旱獭的鼠疫杆菌进行测序,再结合其他参考菌株的基因序列分析菌株的全基因组单核苷酸多态性特征,构建菌株之间的系统发育关系。结果 1958―2020年共发生藏羊为疫情传染源的人间鼠疫疫情16起,发病69人,死亡42人,病死率60.86%。与藏系绵羊相关的鼠疫杆菌都位于系统发育树的同一进化分支1.IN2中,并具有明显的地域性特征。同一鼠疫事件中人、藏系绵羊和周边喜马拉雅旱獭分离菌株位于同一簇群,与流行病学调查资料相符。结论 流行病学结合系统发育关系分析,证实了青海省人间鼠疫来自藏系绵羊,而藏系绵羊鼠疫则起源于旱獭。藏系绵羊是青海高原上重要的家畜,因此不应低估藏系绵羊鼠疫的危害。

【Abstract】 Objective In order to offer a scientific basis for the prevention and management of the Tibetan sheep plague in Qinghai Province, the study looked into the epidemiology of the human plague caused by Tibetan sheep on the Qinghai plateau, as well as the genetic characteristics of the associated Yersinia pestis. Methods To summarize and analyze the human plague data caused by Tibetan sheep in Qinghai Province from 1958 to 2020, as well as to describe its temporal, regional, and population distribution and other epidemiological characteristics. A total of 38 Yersinia pestis strains recovered from humans, Tibetan sheep, and Himalayan marmots were sequenced. The phylogenetic relationship between the strains was created using the gene sequences of other reference strains to assess the properties of single nucleotide polymorphisms in the full genomes of the strains. Results Between 1958 and 2020, there were 16 incidents of human plague in which Tibetan sheep were the source of infection, resulting in 69 illnesses and 42 deaths, with a mortality rate of 60.86%. All Yersinia pestis strains connected to Tibetan sheep belong to the same evolutionary branch of the phylogenetic tree(1.In2) and exhibited distinct regional characteristics. Human, Tibetan sheep, and neighboring Himalayan marmot isolates were all found in the same cluster during the same plague outbreak, which was consistent with epidemiological data. Conclusions Epidemiological and phylogenetic analysis confirmed that human plague originated from Tibetan sheep, and Tibetan sheep plague originated from marmots. Given the Tibetan sheep is an important domestic animal in the Qinghai Plateau, the harm of the Tibetan sheep plague should not be underestimated.

【基金】 国家自然科学基金(81660349);国家卫生健康委鼠疫防治研究重点实验室(共建)(2019PT310004);第二次青藏高原综合科学考察研究资助(2019QZKK0607);青海省鼠疫防控及研究重点实验室(2021-ZJ-Y15)~~
  • 【文献出处】 中华疾病控制杂志 ,Chinese Journal of Disease Control & Prevention , 编辑部邮箱 ,2022年12期
  • 【分类号】R516.8
  • 【下载频次】18
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