节点文献
基于蛋白质相互作用网络局部相似度的肝癌疾病基因预测
Predicting HCC-causative genes based on local similarity indices in human protein-protein interaction network
【摘要】 基于人类蛋白质相互作用网络,该文采纳拓扑局部相似度去实现肝癌疾病基因的预测.交叉检验测试结果表明:有22%~29%的目标基因在候选基因中排名前5%,且预测精度均能达到0.7以上.归因于低的计算复杂度和相对高的预测精度,这类疾病基因预测方法可为发现和鉴定疾病基因提供有力的线索.
【Abstract】 Based on the human protein-protein interaction network, we adopt the local topological similarity in network to predict the hepatocellular-carcinoma(HCC)-related genes. The cross validation showed that the AUC of every similarity index can exceed 0.7, and 22% to 29% known disease genes are at top 5%. Due to both low computing complexity and relatively high prediction accuracy, they might be helpful for disease-related genes discover and identification.
【关键词】 局部相似性指标;
肝癌疾病基因;
蛋白质相互作用网络;
疾病基因预测;
【Key words】 local similarity indices; hepatic carcinoma disease gene; protein-protein interaction; disease-gene prediction;
【Key words】 local similarity indices; hepatic carcinoma disease gene; protein-protein interaction; disease-gene prediction;
【基金】 长沙市杰出创新青年培养计划(kq2009093,kq1905045)
- 【文献出处】 湘潭大学学报(自然科学版) ,Journal of Xiangtan University(Natural Science Edition) , 编辑部邮箱 ,2021年01期
- 【分类号】R735.7
- 【被引频次】2
- 【下载频次】108