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miR-30e-3p在弥漫大B细胞淋巴瘤microRNA芯片集测序数据中的表达及机制研究

Expression and biological mechanism of miR-30e-3p in the Chip-seq data of diffuse large Bcell lymphoma

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【作者】 王颖伦贺菽嘉罗洁石聪陈茜茜程澍李珍珍顾永耀

【Author】 Wang Yinglu;He Shujia;Luo Jie;Shi Cong;Chen Xiqi;Cheng Shu;Li Zhenzhen;Gu Yongyao;Department of Pathology,The First Affiliated Hospital of Guangxi Medical University;Department of Biochemistry and Molecular Biology,School of Basic Medicine,Guangxi Medical University;The First Affiliated Hospital of Guangxi University of Chinese Medicine;

【通讯作者】 顾永耀;

【机构】 广西医科大学第一附属医院病理科广西医科大学基础医学院生物化学与分子生物学教研室广西中医药大学第一附属医院

【摘要】 目的:探究miR-30e-3p在弥漫大B细胞淋巴瘤(DLBCL)的表达意义和潜在分子机制。方法:收集全球范围内4个DLBCL miRNA芯片和miRNA-seq数据集数据,通过计算整合的标准化均数差(SMD)和绘制汇综合受试者工作特征曲线(SROC曲线),检测miR-30e-3p的表达。将miRWalk预测的miR-30e-3p潜在靶标和DLBCL的上调差异基因(DEGs)的交集基因进行功能富集分析。通过6个m RNA基因芯片和RNA-seq数据集验证靶基因的mRNA水平及其与miR-30e-3p的关系。结果:miR-30e-3p在DLBCL组(108个样本)的表达明显低于非肿瘤组(35个样本)(SMD=-2.33)。低表达miR-30e-3p有显著的区分DLBCL和非肿瘤的能力(AUC=0.96)。103个miR-30e-3p潜在靶基因中CDC25A为核心基因,其在171例DLBCL的表达在mRNA水平明显上升(SMD=0.72,AUC=0.93),与miR-30e-3p表达呈明显负相关关系(r=-0.320 4,P=0.028 1)。结论:miR-30e-3p可能通过负向调控其潜在靶基因CDC25A参与DLBCL的发生发展。

【Abstract】 Objective: To explore the expression significance and potential molecular mechanism of miR-30 e-3 p in diffuse large B-cell lymphoma(DLBCL). Methods:The expression of miR-30 e-3 p were assessed by Standardized Mean Difference(SMD) and drawing a summarized receiver operating characteristic(SROC) curve, using data available from 4 miRNAarray and miRNA-sequencing datasets. Intersection of the miR-30 e-3 p potential target genes forecasted from miRWalk,and differentially upregulated genes in DLBCL were used to functional enrichment analysis. Six miRNA array and miRNA-sequencing datasets were applied to verify themRNA level of the tagert gene and the relationship with miR-30 e-3 p. Results:The expression of miR-30 e-3 p in the DLBCL group(108 samples) was significantly lower than that in the noncancer group(35 samples)(SMD=-2.33), and the downregulation of miR-30 e-3 p showed excellent ability in difffferentiating between the two groups(AUC=0.96).CDC25 A was the core gene among 103 miR-30 e-3 p potential target genes. Expression of CDC25 A in the 171 DLBCL samples was significantly high(SMD=0.72, AUC=0.93) and a statistically signifificant negative correlation was found between miR-30 e-3 p and CDC25 A(r=0.3204, P=0.0281).Conclusion: miR-30 e-3 p may participate in the occurrence and development of DLBCL through negative regulation of its potential target gene CDC25 A.

【基金】 广西自然科学基金资助项目(No.2017GXNSFAA198107);广西卫生计生委自筹经费科研项目(No.Z20170556)
  • 【文献出处】 广西医科大学学报 ,Journal of Guangxi Medical University , 编辑部邮箱 ,2021年05期
  • 【分类号】R733.1
  • 【被引频次】1
  • 【下载频次】90
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