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The determinant factors for map resolutions obtained using CryoEM single particle imaging method

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【作者】 王义华余大启欧阳颀刘海广

【Author】 Yihua Wang;Daqi Yu;Qi Ouyang;Haiguang Liu;Key Laboratory for Artificial Microstructure and Mesoscopic Physics, Institute of Condensed Matter Physics, School of Physics, Center for Quantitative Biology School of Physics, The Peking–Tsinghua Center for Life Sciences at School of Physics, Peking University;Complex Systems Division, Beijing Computational Science Research Centre;

【通讯作者】 刘海广;

【机构】 Key Laboratory for Artificial Microstructure and Mesoscopic Physics, Institute of Condensed Matter Physics, School of Physics, Center for Quantitative Biology School of Physics, The Peking–Tsinghua Center for Life Sciences at School of Physics, Peking UniversityComplex Systems Division, Beijing Computational Science Research Centre

【摘要】 The CryoEM single particle structure determination method has recently received broad attention in the field of structural biology. The structures can be resolved to near-atomic resolutions after model reconstructions from a large number of CryoEM images measuring molecules in different orientations. However, the determining factors for reconstructed map resolution need to be further explored. Here, we provide a theoretical framework in conjunction with numerical simulations to gauge the influence of several key factors to CryoEM map resolutions. If the projection image quality allows orientation assignment, then the number of measured projection images and the quality of each measurement(quantified using average signal-to-noise ratio) can be combined to a single factor, which is dominant to the resolution of reconstructed maps. Furthermore, the intrinsic thermal motion of molecules has significant effects on the resolution. These effects can be quantitatively summarized with an analytical formula that provides a theoretical guideline on structure resolutions for given experimental measurements.

【Abstract】 The CryoEM single particle structure determination method has recently received broad attention in the field of structural biology. The structures can be resolved to near-atomic resolutions after model reconstructions from a large number of CryoEM images measuring molecules in different orientations. However, the determining factors for reconstructed map resolution need to be further explored. Here, we provide a theoretical framework in conjunction with numerical simulations to gauge the influence of several key factors to CryoEM map resolutions. If the projection image quality allows orientation assignment, then the number of measured projection images and the quality of each measurement(quantified using average signal-to-noise ratio) can be combined to a single factor, which is dominant to the resolution of reconstructed maps. Furthermore, the intrinsic thermal motion of molecules has significant effects on the resolution. These effects can be quantitatively summarized with an analytical formula that provides a theoretical guideline on structure resolutions for given experimental measurements.

【关键词】 Cryo-EMresolutionnoiseconformation heterogeneity
【Key words】 Cryo-EMresolutionnoiseconformation heterogeneity
【基金】 Project supported by the National Natural Science Foundation of China(Grant Nos.11774011,11434001,U1530401,and U1430237)
  • 【文献出处】 Chinese Physics B ,中国物理B , 编辑部邮箱 ,2018年12期
  • 【分类号】Q617
  • 【下载频次】15
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