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基于荧光定量PCR技术的人类CYP2C9和VKORC1基因多态性检测方法学评价

Evaluation of human CYP2C9 and VKORC1 gene polymorphisms detection based on fluorescent quantitative PCR

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【作者】 戎国栋沈丹婷陈丹赵鸿吴蕾张洁心王芳黄珮珺徐婷

【Author】 RONG Guodong;SHEN Danting;CHEN Dan;ZHAO Hong;WU Lei;ZHANG Jiexin;WANG Fang;HUANG Peijun;XU Ting;Department of Laboratory Medicine, First Affiliated Hospital of Nanjing Medical University;

【机构】 南京医科大学第一附属医院检验学部

【摘要】 目的:对基于荧光定量PCR技术的人类CYP2C9和VKORC1基因多态性检测试剂盒进行性能评价。方法:选取20例已通过Sanger测序确定基因分型的临床样本编盲,按照试剂盒流程进行实时荧光PCR检测,评价其准确度;对4种基因型样本(CYP2C9*3纯合野生型、CYP2C9*3杂合突变型、VKORC1-1639G>A纯合突变型和VKORC1-1639G>A杂合突变型)重复检测10次,评价其批内精密度;DNA样本梯度稀释,评价最低检测限。结果:实时荧光PCR法与测序结果对比分析,结果全部一致,准确度100%。不同基因型批内精密度均≤5%,批内精密度可接受。DNA浓度在0.964μg/μL仍可检测标本的基因型。结论:实时荧光PCR技术对人类CYP2C9和VKORC1基因分型检测在方法学上稳定可靠,此评价模式可适用于基于荧光PCR技术的其他基因多态性试剂盒的评价。

【Abstract】 Objective: To evaluate the performance of human CYP2 C9 and VKORC1 polymorphism detection kit based on fluorescent quantitative PCR. Methods: The genotypes of 20 samples were detected by both Sanger sequencing and real-time PCR blindly to evaluate the accuracy of this kit. The intra-batch precision was evaluated by measuring every genotype sample(including CYP2 C9*3 homozygous wild type, CYP2 C9*3 heterozygous mutant, VKORC1-1639 G>A homozygous mutant and VKORC1-1639 G>A heterozygous mutant) 10 times. The DNA samples were detected by gradient dilution to evaluate the minimum detection limit. Results: The results of real-time PCR were in complete agreement with that of Sanger sequencing, so the accuracy was 100%. The intrabatch of samples with four genotypes was less than 5%. The genotype was detectable when DNA concentration was 0.964 μg/μL. Conclusion: Real-time PCR is a reliable method for the detection of human CYP2 C9 and VKORC1 genotypes. This evaluation model can be applied to the evaluation of other gene polymorphism kits based on fluorescence PCR.

【基金】 江苏省“十三五”科教强卫工程(ZDXKB2016005);南京医科大学“十三五”教育研究课题(QN2017139)~~
  • 【文献出处】 临床与病理杂志 ,Journal of Clinical and Pathological Research , 编辑部邮箱 ,2017年11期
  • 【分类号】R440
  • 【被引频次】4
  • 【下载频次】203
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