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ARMS-PCR反应中不同长度扩增子对肿瘤组织表皮生长因子受体基因突变检测的影响

Length of amplicon in ARMS-PCR affects detection of epidermal growth factor receptor mutation

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【作者】 胡荣君; 杨国华; 郭志伟; 周彩存;

【Author】 HU Rong-jun;YANG Guo-hua;GUO Zhi-wei;ZHOU Cai-cun;Shanghai Geno Biotech Co.Ltd;School of Life Sciences,Fudan University;Department of Oncology,Shanghai Pulmonary Hospital;

【机构】 上海格诺生物科技有限公司; 复旦大学生命科学学院; 上海市肺科医院肿瘤科;

【摘要】 研究应用ARMS-PCR技术分别为表皮生长因子受体(epidermal growth factor receptor,EGFR)基因19外显子缺失和L858R点突变建立3种不同长度扩增子定量检测方法。实验采用不同长度扩增子检测95例非小细胞肺癌(non-small cell lung cancer,NSCLC)患者新鲜冰冻肿瘤组织样本和108例患者石蜡切片样本(formalin-fixation and paraffin-embedding,FFPE)19外显子缺失和L858R突变。结果显示携带突变的FFPE样本中,长度最短扩增子(RDEL-1和RL858R-1)检测样本突变结果显著优于其他2种扩增子(P<0.001;P<0.001);新鲜冰冻肿瘤组织样本不同扩增子检测结果无显著性差异(19外显子缺失:P=0.270;L858R:P=0.249);不同扩增子对野生型(wild type,WT)样本具有很高的检测特异性。研究结果表明试验中采用的几种不同长度扩增子ARMS-PCR方法可适用于新鲜冰冻肿瘤组织EGFR突变检测,但FFPE样本更优选最短的扩增子(RDEL-1和RL858R-1)检测方法。

【Abstract】 In this study,mutations of epidermal growth factor receptor(EGFR),including exon 19 deletion and point mutation L858 Rwere quantitatively detected with AMRS-PCR by using three amplicons with different lengths.The tumor tissue samples came from patients with non-small cell lung cancer(NSCLC)consisting of 95 fresh frozen samples and 108formalin-fixation and paraffin-embedding(FFPE)samples.The results showed that for the FFPE samples,the shortest amplicons RDEL-1and RL858 Rwere showed significantly better performance than the other amplicons on the detection of mutations in FFPE samples(P < 0.001,P< 0.001),whereas for the fresh frozen tissue,amplicons with different lengths did not show significant differences(exon 19 deletion,P=0.270;L858R,P=0.249).All amplicons had a high specificity for wild type specimens.Altogether,these data demonstrate that using ARMS-PCR method,different lengths of amplicons are applicable for determining EGFR mutant type in fresh frozen tissue;however,the amplicons with shorter lengths,RDEL-1and RL858R-1,seem to be a better choice for FFPE samples.

【关键词】 ARMS-PCR; EGFR; 19外显子缺失; L858R; PCR扩增子;
【Key words】 ARMS-PCR; EGFR; exon 19deletion; L858R; PCR amplicon;
  • 【文献出处】 现代免疫学 ,Current Immunology , 编辑部邮箱 ,2016年06期
  • 【分类号】R734.2
  • 【被引频次】1
  • 【下载频次】166
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