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耐辐射奇球菌pprM DNA结合域功能分析预测与基因敲除重组体的构建

Bioinformatics analysis of pprM DNA binding domain and construction of gene knockout vector recombinant in deinococcus radiodurans

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【作者】 杨杰苏泽红李斌元马云肖潇范美婷李伟王秋岩何淑雅

【Author】 YANG Jie;SU Zehong;LI Binyuan;MA Yun;XIAO Xiao;FAN Meiting;LI Wei;WANG Qiuyan;HE Shuya;School of Public Health,University of South China;Department of Biochemistry and Molecular Biology,University of South China;

【机构】 南华大学公共卫生学院南华大学生物化学与分子生物学教研室

【摘要】 通过生物信息学分析发现,pprM基因含有冷休克DNA结合域。利用Overlap PCR方法获得pprM基因DNA结合域缺失的基因片段pprMΔCSD后,酶切扩增的片段和自杀质粒空载体pk18mobsacB,并将目的基因片段与自杀质粒载体连接构建重组载体pk18mobsacB-pprMΔCSD,将重组子转化大肠杆菌JM109感受态,筛选出阳性克隆,酶切及测序鉴定。成功构建pprM DNA结合域基因敲除重组体,且生物信息学分析预测结果显示pprM DNA结合域与耐辐射奇球菌抗辐射功能相关。

【Abstract】 Bioinformatics analysis showed that pprM gene contained a Cold-shock DNA-binding domain. The pprM△CSD was obtained by Overlap-PCR technology. And then it was connected with the suicide vector pk18mobsacB. Before ligation, amplified fragment and the empty vector were digested by the restriction enzyme EcoR? and BamH?. The ligation products were transformed into E.coil JM109. Positive clones were selected and followed by restriction enzyme digestion and sequencing analysis results. The pprM gene DNA binding domain knockout vector recombinants were successfully constructed. The bioinformatics analysis shows that pprM gene DNA binding domain is associated with the radiation resistance function in Deinococcus radiodurans.

【基金】 国家自然科学基金项目(81272993)资助
  • 【文献出处】 辐射研究与辐射工艺学报 ,Journal of Radiation Research and Radiation Processing , 编辑部邮箱 ,2013年06期
  • 【分类号】Q93
  • 【被引频次】2
  • 【下载频次】187
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