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啤酒花潜隐类病毒的实时荧光RT-PCR检测

Detection of Hop latent viroid by real-time fluorescent RT-PCR assay

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【作者】 郭立新段维军张祥林邓丛良闻伟刚李世访

【Author】 GUO Li-xin1,DUAN Wei-jun2,ZHANG Xiang-lin3,DENG Cong-liang4,WEN Wei-gang2,LI Shi-fang5(1Beilun Entry-exit Inspection and Quarantine Bureau,Ningbo 315800,China;2Ningbo Entry-exit Inspection and Quarantine Bureau,Ningbo 315012,China;3Xinjiang Entry-exit Inspection and Quarantine Bureau,Wulumuqi 830063,China;4Beijing Entry-exit Inspection and Quarantine Bureau,Beijing 101312,China;5Institute of Plant Protection,Chinese Academy of Agricultural Sciences,Beijing 100193,China)

【机构】 北仑出入境检验检疫局宁波出入境检验检疫局新疆出入境检验检疫局北京出入境检验检疫局中国农业科学院植物保护研究所

【摘要】 根据啤酒花潜隐类病毒(HpLVd)各分离物基因序列,设计并合成1对特异性引物和1条TaqMan-MGB探针,建立了对HpLVd的实时荧光RT-PCR检测方法。通过对反应体系的优化,确定了HpLVd的实时荧光RT-PCR最佳反应条件:Mg2+终浓度为5.5 mmol/L,引物终浓度为0.7μmol/L,探针终浓度为0.5μmol/L。灵敏度对比试验结果显示,实时荧光RT-PCR的灵敏度较普通RT-PCR通过琼脂糖凝胶电泳高10倍,在25μL反应体系中,总RNA含量达到20 pg就能通过实时荧光RT-PCR检测出来。此方法也能成功检测田间样品上的啤酒花潜隐类病毒。

【Abstract】 A pair of primers and a TaqMan-MGB probe based on the conserved nucleotide sequence of seve-ral Hop latent viroid(HpLVd) isolates were designed and synthesized.A novel real-time fluorescent RT-PCR was established to detect HpLVd.Optimal Mg2+,primer,and probe concentration were 5.5 mmol/L,0.7 μmol/L,and 0.5 μmol/L,respectively by optimization of real-time fluorescent RT-PCR reaction system.The method,detecting as little as 20 pg of total RNA in 25 μL reaction mixture,was ten times more sensitive than the normal RT-PCR.The real-time RT-PCR assay was applied successfully to detect HpLVd in field samples.

【基金】 国家质检总局课题(2009IK256;2011IK169);国家“973”课题(2011CB932800);宁波检验检疫局科研项目(甬K07-2011);国家标准制修订计划项目(20100455-T-469)
  • 【文献出处】 植物病理学报 ,Acta Phytopathologica Sinica , 编辑部邮箱 ,2012年05期
  • 【分类号】S432.41
  • 【被引频次】9
  • 【下载频次】141
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