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十字花科植物HSP22基因同源序列的克隆与进化分析

Cloning and evolutionary analysis of homologous sequences of HSP22 gene in Cruciferae

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【作者】 程影黄锐之钟新民侯喜林吴学龙王五宏李必元刘智宏

【Author】 CHENG Ying1,2,HUANG Rui-zhi3,ZHONG Xin-min2,HOU Xi-lin1, WU Xue-long3,WANG Wu-hong2,LI Bi-yuan2,LIU Zhi-hong3(1.State Key Laboratory of Crop Genetics and Germplasm Enhancement,Nanjing Agricultural University,Nanjing 210095,China; 2.Institute of Vegetable Sciences,3.Institute of Virology and Biotechnology/Key Laboratory of Plant Metabolic Engineering of Zhejiang Province,Zhejiang Academy of Agricultural Sciences,Hangzhou 310021,China)

【机构】 南京农业大学作物遗传与种质创新国家重点实验室浙江省农业科学院蔬菜研究所浙江省农业科学院病毒学与生物技术研究所浙江省植物代谢基因工程试验基地

【摘要】 采用PCR克隆技术,根据已报道的拟南芥的AtHSP22基因全长及其他物种同源序列设计特异引物,在十字花科植物大白菜、普通白菜、芥菜型油菜、甘蓝型油菜、花椰菜、芥菜、荠菜、萝卜3个属10个物种中成功克隆得到耐热相关基因HSP22的同源序列10条。序列比对分析表明:这些同源序列的相似性达89.3%以上,所推导的氨基酸序列相似性达92.1%以上。由进化树可直观地看出,芸薹属与荠属亲缘关系最近,首先聚为一类;其次与萝卜属、拟南芥属聚为一类。由氨基酸序列预测的高级结构存在明显差异,且无规则卷曲最多,α-螺旋均在30%以上,因而属于α结构蛋白。

【Abstract】 HSP22 gene analogues from Brassica rapa subsp.pekinensis,Brassica chinensis,Raphanus sativus L.,Brassica rape,Brassica oleracea L.var.botrytis L.,Capsella bursa-pastoris L.,Brassica juncea Coss and Brassica napus,10 species of 3 genera in Cruciferae were obtained by PCR strategy using gene specific primers designed based on the full-length sequence of previously reported AtHSP22 gene and other similar sequences in homologous species.The secondary structure and three-dimensional structure were also predicted.Sequences alignment indicated that the similarities of the genes were more than 89.3% and 92.1% at nucleotide and amino acid levels,respectively.The NJ(Neighbor-joining)evolutionary tree showed that Brassica was closely related to Capsella,followed by Raphanus and Arabidopsis.The senior structures predicted by amino acid sequences displayed marked differences,the most content was random coil,and α-helix all reached to 30%,so it belongs to α structural proteins.

【关键词】 十字花科植物HSP22基因克隆进化分析
【Key words】 CruciferaeHSP22 genecloneevolutionary analysis
【基金】 国家863计划项目(2008AA02Z103);浙江省农业科学院科技创新项目
  • 【文献出处】 南京农业大学学报 ,Journal of Nanjing Agricultural University , 编辑部邮箱 ,2012年04期
  • 【分类号】S63
  • 【被引频次】1
  • 【下载频次】198
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