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RT-PCR克隆籼稻叶绿素a/b结合蛋白基因全长cDNA及序列的in silico分析

RT-PCR Cloning and in silico Analysis of a Full-length cDNA Gene Encoding the Light-harvesting Chlorophyll a/b-binding Protein in Rice(Oryza sativa L.subsp indica)

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【作者】 袁定阳余东谭炎宁孙志忠韶也孙学武段美娟

【Author】 Yuan Dingyang 1,2,4** Yu Dong 1,2* Tan Yanning 1,2,3 Sun Zhizhong 1,2 Shao Ye 1,2 Sun Xuewu 1,2,4 Duan Meijuan 1,2,4** 1 State Key Laboratory of Hybrid Rice,Hunan Hybrid Rice Research Center,Changsha,410125;2 Hunan Academy of Agricultural Sciences,Changsha,410125;3 Hunan Agricultural University,Changsha,410125;4 Long Ping Branch of Graduate School of Central South University,Changsha,410125 * The authors who contribute equally to this work ** Corresponding authors,yuandingyang@hhrrc.ac.cn;duanmeijuan@163.com DOI:10.3969/gab.031.000173

【机构】 湖南杂交水稻研究中心杂交水稻国家重点实验室湖南省农业科学院中南大学研究生院隆平分院湖南农业大学农学院

【摘要】 根据日本晴cab4基因序列(GenBank:AK104499.1)设计引物,用RT-PCR的方法从籼稻9311中克隆了叶绿素a/b结合蛋白基因的全长cDNA,命名为cab-9311(cab gene from 9311)。insilico分析表明:cab-9311与cab4基因同源性为99%,编码的蛋白含有244个氨基酸,与cab4基因编码的蛋白同源性为98%。蛋白分子质量为26.9kD,理论等电点为6.52。第54位~第216位氨基酸是一个典型的叶绿素a/b结合蛋白功能域(chlorophyll a/bbinding domain)。跨膜分析和蛋白质三级预测显示,该蛋白在C端有一个典型的跨膜区。亚细胞定位分析表明该蛋白定位于叶绿体,是一个叶绿体内囊体膜上的锚定蛋白。

【Abstract】 With the primer designed according to the Nipponbare cab4 gene sequence(GenBank:AK104499.1),a full-length cDNA gene encoding the light-harvesting chlorophyll a/b-binding protein in rice 9311 was cloned by RT-PCR,and it was named cab-9311(cab gene from 9311).In silico analysis shows that the cab-9311 cDNA sequence has 99% homology to the cab4 cDNA sequence.Cab-9311 encodes a protein of 244 amino acids which has 98% homology to the protein encoded by cab4 gene.The molecular weight of that protein is about 26.9 kD and its isoelectric point is 6.52.The amino acid residues 54~216 of that protein is a chlorophyll a/b binding domain.The analysis of transmembrane protein and the prediction of protein tertiary structure show a typical transmembrane domain is located in the C-terminus of that protein.The prediction of the subcellular location shows that protein is located in the chloroplast.All the results give a clue that the protein encoded by cab-9311 is embedded in the thylakoid membranes.

【基金】 农业部转基因专项(2011ZX08001-004,2008ZX08001-001);湖南省自然科学基金(09JJ3046);湖南省农科院科技创新项目(2009hnnkycx17)共同资助
  • 【文献出处】 基因组学与应用生物学 ,Genomics and Applied Biology , 编辑部邮箱 ,2012年02期
  • 【分类号】S511.21
  • 【被引频次】7
  • 【下载频次】321
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