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聚球藻hox1基因的克隆和序列分析
Cloning and Sequence Analysis of hox1 Gene from Synechococcus cedrorum
【摘要】 本实验应用降落PCR方法从聚球藻Synechococcus cedrorum中扩增出717bp的hox1基因全序列,并与从Gen-Bank下载13个蓝藻hox1基因序列比较,用MEGA4.0进行序列同源性分析及蛋白结构特性分析。结果表明,Synecho-coccus cedrorum的hox1基因与聚球藻Synechococcus PCC7942和钝顶节旋藻Arthrospira platensis的hox1基因序列同源性分别为99.9%和99.2%,氨基酸序列同源性分别为99.6%和97.9%。还用邻接法和最大简约法构建了系统树并进行了聚类分析。
【Abstract】 The complete hox1 gene including 717bp was cloned from Synechococcus cedrorum by using touchdown PCR technology.Homology analysis based on cyanobacteria hox1 gene showed that the similarity is 99.9% between Synechococcus cedrorum and Synechococcus PCC7942 and 99.2% between Synechococcus cedrorum and Arthrospira platensis.The similarity of deduced amino acid is 99.6%(between Synechococcus cedrorum and Synechococcus PCC7942) and 97.9%(between Synechococcus cedrorum and Arthrospira platensis) respectively.The phylogenetic relationships among eight cyanobacteria were constructed by the methods of neighbor-joining(NJ) and maximum parsimony(MP).
【Key words】 Synechococcus; hox1 gene; heme oxygenase1; phylogenetic analysis;
- 【文献出处】 中国海洋大学学报(自然科学版) ,Periodical of Ocean University of China , 编辑部邮箱 ,2010年S1期
- 【分类号】Q943.2
- 【被引频次】2
- 【下载频次】157