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基于肿瘤基因表达数据的简单有效的基因选择算法(英文)

A simple effective gene selection method based on tumor gene expression data

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【作者】 许文龙王立荣张相华冯焕清

【Author】 XU Wen-long,WANG Li-rong,ZHANG Xiang-hua,FENG Huan-qing(Dept.of Electronic Science and Technology,University of Science and Technology of China,Hefei 230027,China)

【机构】 中国科学技术大学电子科学与技术系

【摘要】 结合了基因表达数据类内和类间表达差异的信息,提出一种新的基因选择算法,利用它选择出来的特征基因表达作为支持向量机的输入特征向量,对四个常用数据集进行分类,结果表明,该方法可以显著提高分类精度,同时通过对选取出来的特征基因在相关信号通路上的分析,表明该方法能够得到更多的肿瘤相关基因,具有很强的鲁棒性和很高的精确度.

【Abstract】 A novel gene selection method based on tumor gene expression data was proposed.It incorporated the within-class and between-class variations of the gene expression values to select significant genes.It was evaluated on four publicly available tumor gene expression datasets,using leave-one-out cross-validation based on SVM classifier.The performance was measured by the classification accuracies and the top ranked genes are discussed and annotated in special disease pathways.The experimental results show that the proposed gene selection method is effective and robust.The selected genes by our proposed method in general give more accurate classification results and the top ranked genes are biologically significant.

【基金】 Supported by a Grant from Innovation Center for Post graduates at HFNL (C07-05)
  • 【文献出处】 中国科学技术大学学报 ,Journal of University of Science and Technology of China , 编辑部邮箱 ,2009年08期
  • 【分类号】R730.2
  • 【被引频次】2
  • 【下载频次】79
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