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鸡IFN-α和IFN-β及IFN-γ基因实时荧光定量RT-PCR检测方法的建立

Establishment of a real-time fluorescent quantitative RT-PCR assay for detection of chicken IFN-α,IFN-β and IFN-γ genes

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【作者】 张贺楠赖汉漳齐岩孔留五张小桃曹伟胜廖明

【Author】 ZHANG He-nan,LAI Han-zhang,QI Yan,KONG Liu-wu,ZHANG Xiao-tao,CAO Wei-sheng,LIAO Ming(Key Laboratory of Animal Disease Control and Prevention of the Ministry of Agriculture/College of Veterinary Medicine,South China Agricultural University,Guangzhou 510642,China)

【机构】 华南农业大学兽医学院农业部动物重大疫病防控重点开放实验室

【摘要】 根据GenBank上鸡α-、β-、γ-干扰素(ChIFN-α、-β、-γ)基因的序列,在保守区设计并合成各自特异引物,并以鸡3-磷酸甘油脱氢酶(GAPDH)基因为内参,采用SYBR GreenⅠ染料以建立实时荧光定量PCR检测方法。将IFN-α、-β、-γ基因克隆至pGEM-T载体上,以各阳性质粒作为标准品,构建标准曲线,并进行了熔解曲线分析。结果表明,鸡IFN-α、-β、-γ和GAPDH基因的Ct值与标准品稀释度在1×102~1×108copies/μL范围分别呈良好的线性关系,r2均大于0.990。熔解曲线分析表明,产物为特异的单峰,检测周期从RNA提取到荧光定量PCR结束只需4 h。建立的鸡IFN-α、-β、-γ基因实时荧光定量PCR灵敏度高、特异性强、检测周期短,为在mRNA水平对鸡IFN的定量分析奠定了基础。

【Abstract】 According to the chicken’s IFN-α,-β,and-γ(ChIFN-α,-β,-γ) gene sequences available in GenBank,five pairs of primers were designed for developing a SYBR GreenⅠ quantitative real-time PCR method to detection IFN-α,-β,and-γ genes of chicken while the chicken glyceraldehyde-3-phosphate dehydrogenase(ChGAPDH) gene was used as an internal control.To establish the standard curve,the positive plasmid of each cytokine served as a standard.The melting curve was also analyzed.The results showed that the Ct of ChIFN-α,-β,and-γ or ChGAPDH genes had a good linear relationship(r2>0.990) with the standard samples from 1×102to 1×108 copies/μL,and the melting curve showed a single peak.The deve-loped real-time PCR assay could quickly detect IFN-α,-β,and-γ genes in expansion range with high efficiency,thus providing the basis for quantitative analysis of IFN-α,-β,and-γ gene expression.

【基金】 国家自然科学基金项目(30771612)
  • 【文献出处】 中国兽医科学 ,Chinese Veterinary Science , 编辑部邮箱 ,2009年02期
  • 【分类号】S852.4
  • 【被引频次】29
  • 【下载频次】710
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