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改进的遗传算法在蛋白质结构预测中的应用

THE APPLICATION OF IMPROVED GENETIC ALGORITHMS FOR PREDICTING PROTEIN STRUCTURES

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【作者】 李绍新张延娇

【Author】 LI Shao-xin1,ZHANG Yan-jiao2(1.Section of Physics Teaching,Guangdong Medical College,Zhanjiang,Guangdong 524023,China; 2.Laboratory of Physiology Science,Guangdong Medical College,Zhanjiang,Guangdong 524023,China)

【机构】 广东医学院物理教研室广东医学院生理科学实验室

【摘要】 为了提高蛋白质结构预测效率,针对蛋白质HP模型折叠问题,在标准遗传算法的基础上,提出了一系列改进的搜索策略:控制群体中全同体数目,保持群体多样性;在交叉阶段实施单点交叉父子竞争提高个体生存竞争力;对最优个体实施系统变异局部优化等.实验结果表明,与标准遗传算法相比,改进后的遗传算法较大幅度地提高了搜索效率和成功率,遗传算法在蛋白质空间结构预测上是一个有相当潜力的算法.

【Abstract】 To improve efficiency of predicting protein structures,a series of improved search strategies is investigated based on the standard genetic algorithms(GA) for the hydrophobic-polar(HP) protein folding problem.The new strategies include the followings: to control the number of identical individuals for maintaining the diversity of populations,to combine with competing between parent and offspring at a single point crossover to enhance the survival level,to give a local search algorithm based on systematic mutation coupled with the best individuals,and so on.The experiments show that the improved genetic algorithms lead to significant improvements in the efficiency and success of the GA,and GA has a significant potential for predicting protein configuration.

【关键词】 遗传算法蛋白质折叠HP模型
【Key words】 genetic algorithmsprotein foldingHP model
【基金】 湛江市科技攻关资助项目(2006C10012)
  • 【文献出处】 华南师范大学学报(自然科学版) ,Journal of South China Normal University(Natural Science Edition) , 编辑部邮箱 ,2009年01期
  • 【分类号】Q51
  • 【被引频次】10
  • 【下载频次】289
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