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新疆盐生植物猪毛菜逆向运输蛋白基因SaNHX1 3’-RACE的克隆及序列分析
Clone and Sequence Analysis of 3’RACE of Antiporter Protein Gene SaNHX1 in Xinjiang Halophytes Plant Salsola collina Pall.
【摘要】 以新疆盐生植物猪毛菜(Salsola collina Pall.)为材料提取总RNA,根据NHX1家族同源序列保守区设计1对简并引物,进行RT-PCR扩增,得到猪毛菜逆向运输蛋白基因cDNA中间一段619 bp序列。再用快速扩增cDNA 3’末端(3’RACE)方法,得到约1 000 bp 3’末端序列。将两段序列进行拼接,得到猪毛菜长为1 585bp(Gen Bank登陆号为EU072932)的逆向运输蛋白基因(SaNHX1)cDNA序列,编码370个氨基酸,其编码序列、氨基酸序列与同科耐盐植物盐角草相应序列同源性为85%和87%,研究为进一步克隆猪毛菜NHX1全基因序列和研究其功能打下基础。
【Abstract】 Total RNA in this experiment was extracted from Xinjiang halophytes plant Salsola affinis(Salsola collina Pall.).According to NHX1 family homologous sequence conservative region,.one pair of degenerate primers was used for RT-PCR amplification.The results showed that a partial middle 619 bp fragment of SaNHX1 antiporter protein was obtained.The 3’ end sequence was obtained by 3’ RACE method.These two fragments were overlapped,getting SaNHX1 3’terminal fragment 1 585 bp sequence encoding 370 amino acid residues.The codon sequence and amino acid sequence of the 3’ends of SaNHX1 gene were shared by 85% and 87% identity with those of the same family halophytes SeNHX1 gene respectively.This research provided a basic foundation to clone the whole NHX1 sequence and study its structure and function.
【Key words】 Salsola collina Pall.; antiporter protein; SaNHX1 gene; 3’RACE; clone;
- 【文献出处】 新疆农业科学 ,Xinjiang Agricultural Sciences , 编辑部邮箱 ,2008年03期
- 【分类号】Q943.2
- 【被引频次】11
- 【下载频次】423