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2006年北京市外来人口中HIV-1感染者流行毒株gag基因序列测定和亚型分析
Subtype and sequence analysis of gag genes among HIV-1 strains circulating in Beijing immigration during 2006
【摘要】 目的了解北京市外来人口中HIV-1亚型的特点和流行规律。方法随机采集北京市2006年外来人口中新确证HIV-1感染者的抗凝全血标本80份,分离血浆,提取病毒RNA,用套式聚合酶链反应扩增病毒gag基因,并进行序列测定和亚型分析。结果系统进化分析确定北京市外来人口HIV-1毒株属于8个亚型,分别为B亚型4份,泰国B亚型15份,C亚型1份,CRF01AE亚型5份,CRF02AC亚型1份,CRF07BC亚型29份,CRF08BC亚型3份,CRF1501B亚型1份。结论北京市外来人口中已存在8种HIV-1亚型和流行重组型,应该加强对HIV-1亚型变异的监测。
【Abstract】 Objective To investigate the subtype distribution and sequence characteristics of HIV-1 strains prevalent in Beijing during 2006, and to analyze the relationship between distribution of HTV-1 subtypes and transmission routines. Methods We collected the blood samples from 80 HIV-1 infected individuals from immigration in Beijing during 2006 and separated plasma specimens. RNA was extracted and the gag gene was amplified by RT-PCR and nest-PCR. The PCR products were sequenced directly and phylogenetic analysis of gag gene was performed using the MEGA2 software. Results Among 80 HIV-1 plasma samples,59 gag HIV-1 gene fragments were amplified and analyzed. Eight HIV-1 subtypes or circulating recombinant forms(CRF) of HIV-1 including B(4 strains), Thai B(15 strains), C(1 strains), CRP01 AE (5 strains), CRF02 AG(1 strains), CRP07BC (29 strains), CRF08BC(3 strain),CRF15 01B (1 strains) were identified circulating in Beijing. The gene divergences inside the subtypes were different, with 6.8 % , 25.4 % , 1.7 % , 5.5 % , 1.7 % , 49.2 % , 5.1 % and 1.7% in subtype B, Thai B, C, CRF01 AE, CRF02 AG, CRF07 BC, CRF08 BC, CRF1501B respectively. Subtypes CRF07 BC were predominant in Beijing immigration account for 49.2% among 59 samples. Conclusion Eight HIV-1 subtypes exist in Beijing and the surveillance of HIV-1 gene variation should be paid more attention.
【Key words】 HIV-1; Subtype; Nested-PCR; Sequence analysis; Phylogenetic tree;
- 【文献出处】 中华微生物学和免疫学杂志 ,Chinese Journal of Microbiology and Immunology , 编辑部邮箱 ,2007年10期
- 【分类号】R512.91
- 【被引频次】5
- 【下载频次】13