节点文献

上海地区部分婴幼儿腹泻标本中诺如病毒基因分析

Gene sequence analysis of the Norovirus detected in diarrhea samples from infants in a region of Shanghai

  • 推荐 CAJ下载
  • PDF下载
  • 不支持迅雷等下载工具,请取消加速工具后下载。

【作者】 滕峥张曦翁康生邵俊杰赵百慧卢伟

【Author】 TENG Zheng,ZHANG Xi,WENG Kang-sheng,SHAO Jun-jie,ZHAO Bai-hui,LU Wei(Shanghai Municipal Center for Disease Control and Prevention,Shanghai 200336,China)

【机构】 上海市疾病预防控制中心微生物实验室上海市疾病预防控制中心微生物实验室

【摘要】 目的了解2006年上海哨点医院婴幼儿疑似病毒性腹泻散发病例中诺如病毒基因型别和基因特征。方法应用反转录-聚合酶链反应(RT-PCR)扩增标本中诺如病毒核酸,测序后使用DNAstar基因分析软件与Genbank中的参考株进行核酸序列分析。结果13份测序结果均属于诺如病毒GⅡ遗传组,以GⅡ.4基因型为主。其中2份核酸序列与2006年德国汉堡毒株序列同源性相近,分别为86.2%和88.2%;2份核酸序列与2006年荷兰乌得勒支毒株序列同源性相近,均为83.9%;其余9份核酸序列与2004年中国广西、2004年和2005年日本东京毒株序列同源性相近,为87.3%~97.5%。结论2006年上海哨点医院婴幼儿疑似病毒性腹泻标本中存在诺如病毒GⅡ.4基因型散发病例,不同病毒株之间差异较大。

【Abstract】 Objective In order to study the genotype and the genetic identity of Norovirus in sporadic infant diarrhea samples collected from surveillance hospitals from the Shanghai area in 2006.Methods The viral RNA was RT-PCR amplified using human caliciviruses-specific primers. The amplified genes were then sequenced and analyzed using Genetic Analyzer and DNAstar software to complete genotyping and homology analysis.Results Homology analysis revealed that the sequences of 13 specimens were homogeneous with Norovirus GⅡ. The sequences of 2 specimens were closer to the viral sequence obtained from Hamburg in 2006. The sequences of 2 other specimens were closer to the sequences obtained from a virus from Utrecht in 2006 and the sequences of 9 other specimens were closer to those of sequences from Guangxi in 2006 and Tokyo between 2004 and 2005.Conclusion The cases of diarrhea presented at various surveillance hospitals in Shanghai were diverse with regard to Norovirus genogroup GⅡ.The majority of the sporadic strains in this study belonged to genotype GⅡ.

【关键词】 诺如病毒遗传组基因型序列分析
【Key words】 NorovirusGenogroupGenotypeSequence analysis
【基金】 上海市卫生局病原微生物重点学科项目(编号05Ⅲ029)
  • 【文献出处】 微生物与感染 ,Journal of Microbes and Infection , 编辑部邮箱 ,2007年03期
  • 【分类号】R725.1
  • 【被引频次】7
  • 【下载频次】115
节点文献中: 

本文链接的文献网络图示:

本文的引文网络