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一株长春地区戊型肝炎病毒全基因cDNA序列测定

Sequencing the Whole cDNA of Hepatitis E Virus from Changchun

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【作者】 刘子玲迟宝荣刘金香

【Author】 LIU Zi-ling, CHI Bao-rong, LIU Jin-xiang (The First Hospital of Jilin University, Changchun 130021, China)

【机构】 吉林大学第一医院吉林大学第一医院 吉林长春130021吉林长春130021吉林长春130021

【Abstract】 Through analyzing the whole cDNA sequence of the sporadic Hepatitis E virus gene and comparing it with other genotypes,we can understand its variability.We used RT-nPCR to assay the HEV RNA of a patient who was diagnosed with sporadic hepatitis E virus. We designed the primers according to different segments respectively to amplify the whole gene,and sequenced the product . The whole cDNA of HEV contains 7139bp,which consisits of 5’-UTR(nt 1-9),ORF1(nt 10-5130,1706aa),ORF2(nt 5127-7151,674aa),ORF3(nt 5155-5499,114aa),and 3’-UTR(nt 7152-7193). The identity of nucleic acid between it and genotypeI, genotypeII, genotypeIII, genotypeIV is 73.2%~74.1%,72.4%,73.95%~75.2% and 83.9%~85.6%,respectively. Analyzing the phylogenetic tree showed that it is relevant to HEV genotypeIV line. Sporadic hepatitis E virus in Changchun is HEV IV,and it has higher heterogeneity.

【基金】 国际合作基金资助项目(200305)
  • 【文献出处】 中国病毒学 ,Virologica Sinica , 编辑部邮箱 ,2005年01期
  • 【分类号】R346
  • 【被引频次】3
  • 【下载频次】79
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