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用抑制性差减杂交构建新疆Kaposi肉瘤差异表达基因文库

Construction of Differential Library of Xinjiang Kaposi′s Sarc oma by Suppression Subtractive Hybridization

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【作者】 李冬妹杨磊仙玲玲谭晓华李锋应康普雄民王小波何玲

【Author】 LI Dong mei~1 YANG Lei~1 XIAN Ling-ling~1 TAN Xiao-hua~ 1 LI Feng~1 YING Kang~2 PU Xiong-min~3 WANG Xiao-bo~4 HE Ling~1 (1 Laboratory of Xinjiang Endemic and Ethnic Disease, Shihezi U niversity Shihezi 832002, China) (2 State Key Lab of Genetic Engineering, Fudan University Shanghai 200031, Chi na) (3 The People′s Hospital of Xinjiang Uygur Autonomous Region Urumqi 830001, C hina) (4 Department of Dermatology of First Affiliated Hospital of Shihezi University Shihezi 832002, China)

【机构】 石河子大学新疆地方与民族高发病省部共建教育部重点实验室复旦大学遗传工程国家重点实验室新疆维吾尔自治区人民医院石河子大学医学院第一附属医院皮肤科石河子大学新疆地方与民族高发病省部共建教育部重点实验室 石河子832002石河子832002上海200031乌鲁木齐830001石河子832002

【摘要】 目的:分离卡波氏肉瘤(Kaposi′s sarcoma,KS)差异表达基因,并建立相应的cDNA文库,为从分子水平揭示KS发病机制打下良好的基础。方法:采集KS肉瘤及来源于同一患者的正常皮肤组织,抽提总RNA,经逆转录酶合成dscDNA,并经RsaⅠ酶切,与2种不同的接头衔接,分别以正常组织和肿瘤组织作为tester和driver,进行双向抑制性差减杂交(suppression subtractive hybridization,SSH),初步筛选KS肉瘤与正常皮肤差异表达基因,将差异基因PCR扩增,产物与pGEM-Teasy克隆载体连接,转化DH5α大肠杆菌,采用蓝白斑筛选,获得白色阳性克隆菌落,并煮沸破菌,PCR扩增出未知基因片段。结果:差减得到差异基因片段多位于200~500bp,成功构建了2个分别代表在KS肿瘤组织中表达上调和下调的基因文库。结论:经双向抑制性差减杂交获得了KS差异表达基因文库。抑制性差减杂交是一种快速、方便、有效的建立差异基因文库的方法。

【Abstract】 Objective: To screen differentially expressed g en es in KS and construct the gene library to provide a new idea for clarification of the pathogenesis of the KS. Methods: Kaposi′s sarcoma tissues and normal ski n tissues were collected from the same patient. Total RNA was extracted and supp ress subtractive hybridization(SSH) was conducted according to manufacture′s ma nual. The positive control was provided by the kit in which foreign cDNA ×174DNA/HaeⅢ was added into the skeletal muscle cDNA. The positive control was performed in parallel with samples. Differentially expressed genes were lin ked with pGEM-Teasy cloning vector and transformed into E. coli DH5α. The positive clones were screened by blue and white spot. PCR were used to amplify t hese genes. Results: Multiple differentially expressed genes strips located at 2 00~500bp were obtained by suppression subtractive hybridization. Two differentia l libraries representing the up-regulated and down-regulated genes in KS were constructed. Conclusion: Differentially expressed genes in Kaposi′s sarcoma dif ferential libraries were gained, which will be a solid foundation to elucidate t he pathogenesis of Kaposi′s sarcoma.

【基金】 国家自然科学基金资助项目(30160082)
  • 【文献出处】 中国生物工程杂志 ,Progress In Biotechnology , 编辑部邮箱 ,2005年08期
  • 【分类号】R73-3;
  • 【被引频次】13
  • 【下载频次】133
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