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利用正交设计优化水曲柳ISSR-PCR反应体系

Optimization for ISSR-PCR System of Fraxinus mandshurica Rupr.Using Orthogonal Design

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【作者】 谢运海夏德安姜静林萍

【Author】 Xie Yunhai1* Xia De’an1 Jiang Jing1 Lin Ping2 1 Department School of Forest, Northeast Forestry University, Harbin, 150040; 2 Institute of Heilongjiang Forestry Research, Harbin, 150040

【机构】 东北林业大学林学院黑龙江省林业科学院 哈尔滨150040哈尔滨150040

【摘要】 利用正交设计L16(45)对水曲柳ISSR-PCR反应体系的5因素(Taq酶,Mg2+,模板DNA,dNTP,引物)在4个水平上进行优化试验,PCR结果用统计软件MINITAB分析:①各因素的不同水平对PCR反应结果都有显著的影响,其中Taq酶量影响最大;②筛选出各反应因素的最佳水平,建立水曲柳ISSR-PCR反应的最佳体系(20滋l)为:Taq酶1.0U,Mg2+2.0mmol/L,模板DNA50 ̄200ng,dNTP0.15mmol/L,引物0.3滋mol/L。最后,对水曲柳ISSR-PCR最佳反应体系进行梯度退火,得到最佳退火温度为58.3℃。这一优化系统的建立为今后利用ISSR标记技术,研究水曲柳的地理变异提供一个标准化程序。

【Abstract】 In this paper, the orthogonal design was used to optimize ISSR-PCR ampl ification system on Fraxinus mandshurica Rupr. in four levels of five factors (T aq DNA polymerase, Mg2+, DNA template, dNTP, and primer) respectively. The resul t of PCR was analyzed by software MINITAB, and the result showed that: ①The aff ections of each factor in different levels were found and the quantity of Taq DN A polymerase was the most effective factor to the result of PCR; ② A most suita ble ISSR-PCR system for Fraxinus mandshurica Rupr. was established, it’s 20?滋l reaction system which contained 1.0U Taq DNA polymerase, 2.0mmol/L Mg2+, 50~200n g DNA template, 0.15mmol/L dNTP, and 0.3?滋mol/L Primer. The optimal annealing t emperature for ISSR-PCR reaction was proposed by gradient PCR and it was 58.3℃. The result provided a standardizing ISSR-PCR program for the analysis of geogra phic variation of Fraxinus mandshurica Rupr.

【关键词】 正交设计ISSR-PCR水曲柳
【Key words】 Orthogonal designISSR-PCRFraxinus mandshurica Rupr.
  • 【文献出处】 分子植物育种 ,Molecular Plant Breeding , 编辑部邮箱 ,2005年03期
  • 【分类号】S792.41
  • 【被引频次】209
  • 【下载频次】977
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