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柑桔黄龙病病原16SrDNA克隆、测序及实时荧光PCR检测方法的建立

Cloning and Sequencing of Citrus Huanglongbing Pathogen 16S rDNA and Its Detection by Real-time Fluorescent PCR

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【作者】 廖晓兰朱水芳赵文军罗宽漆艳香陈红运何昆朱晓湘

【Author】 LIAO Xiao-Lan1 ZHU Shui-Fang2** ZHAO Wen-Jun2 LUO Kuan1 QI Yan-Xiang1 CHEN Hong-Yun2 HE Kun1 ZHU Xiao-Xiang1( 1. College of Plant Protection, Hunan Agricultural University, Changsha 41012 8, China; 2. Animal and Plant Quarantine Institute, State Administration of Ent ry-exit Inspection and Quarantine of China, Beijing 100029, China)

【机构】 湖南农业大学植物保护学院国家质检总局动植物检疫实验所湖南农业大学植物保护学院 长沙410128北京100029长沙410128长沙410128

【摘要】 克隆并测定了中国柑桔黄龙病病原16SrDNA基因序列,经同源性比较,表明属于柑桔黄龙病菌(Liberobacterasiaticum)亚洲种中一个新株系(中国厦门株系)。依据获得的16SrDNA特异序列,建立了柑桔黄龙病病菌检测的实时荧光PCR方法,并应用此方法对柑桔样品进行了检测。结果显示,该检测方法具有快速、特异、敏感、重复性好等优点。该方法为柑桔黄龙病的检测,特别是早期诊断、检疫和病害的综合治理奠定了基础。

【Abstract】 The 16S rDNA gene of citrus Hunanglongbing pathogen(Liberobacter asiat icum ) in China was cloned and sequenced. The 16S rDNA of the Chinese pathogen w as 99.8% and 98.7% homogous to those of L.asiaticum and L.africanu. This means t hat the pathogen should be a new strain of L.asiaticum designated as China Xiame n strain. A real-time fluorescent PCR(RTF-PCR) method based on the 16S rDNA sequ ence was established to detect L.asiaticum. Its principle is that Taq Man probes relying on fluorescence resonance energy transfer (FRET) for quantitation are o ligonucleotides that contain a fluorescent dye, typically on the 5’ end, and a q uenching dye, typically located on the 3’ end. When irradiated, the excited fluo rescent dye transfers energy to the nearby quenching dye molecule without fluore scing. Taq Man probes are designed to hybridize to an internal region of a PCR p roduct. During PCR, when the polymerase replicates a template on which a Taq Ma n probe is bound, the 5’ exonuclease activity of the polymerase cleaves the prob e. This separates the fluorescent and quenching dyes and FRET no longer occurs. Fluorescence increases in each cycle, proportional to the rate of probe cleavage . Using RTF-PCR, 11 plant samples were detected . The described method has the a dvantage of high speed ,sensitivity, specifity and stable reproductivity. The me thod could identify the pathogen at early stage of infection in the diseased tre es without any symptom, it should be in favor of quarantine and control of citru s Hunanglongbing disease.

【基金】 国家质检总局植物病原检测专项(No.Z2000-3-182)
  • 【文献出处】 农业生物技术学报 ,Journal of Agricultural Biotechnology , 编辑部邮箱 ,2004年01期
  • 【分类号】S436.66
  • 【被引频次】140
  • 【下载频次】818
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